Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1740 ATGGCTGCAGGGATTGGCCTTGTCTCGGTGACCCAGAtccaaaatttgtcaaaatccCAACACCATCAAAATCAACCAAACCCTAACTCCACCCCTCCTCCCACCGCCTCATCATCAACTCGGATGAGGAATCCGAGGGACCAACAAGACCAAGACGATGACTCGTGGGaggtcagagcctttgcagaaGACACCAGTAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCCGTTCAGCACAAGCTCTCGGTGGCCACATGAACGTTCACCGCCGTGACCGTGCTCGCCTTCACCAAGCTTCACCCAACAACCACCCCGTcaaccctctctctctctctcaccccTCACTCTCTTTCCTTAACATCTCTCACTCTCAGGAGCCTTTTGCAAATGGTGGGTTGTGCCCCCTCTACCCCTTCCCAAGCCCTAACAATGCTCCATTCTCCTCTCTTAGCCGCAACAGCAACACTGCTTTGAATAATGTATGTGCTGACTCACCCTCCACTCTTCTCTCAGTTTCTTCCCATTCCCACCCTCCAAACAACTTGATGAGGATGCCAGCTTGCTCAACTACTTCCTTCGATTTCTCAGTGGCTCAGCCTGCTCCAAGGATGAatgttttctcttcttattctGGCAAAGTGGAACAAGAACCCACAACATCTTCCACCAATCATGGCCACCACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGTGA 768 0.4674 MAAGIGLVSVTQIQNLSKSQHHQNQPNPNSTPPPTASSSTRMRNPRDQQDQDDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPNNHPVNPLSLSHPSLSFLNISHSQEPFANGGLCPLYPFPSPNNAPFSSLSRNSNTALNNVCADSPSTLLSVSSHSHPPNNLMRMPACSTTSFDFSVAQPAPRMNVFSSYSGKVEQEPTTSSTNHGHHEELDLELRLGNRSTST 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1740 255 SMART c2h2final6 78 100 IPR013087 -
Ssu6g1740 255 MobiDBLite consensus disorder prediction 224 255 - -
Ssu6g1740 255 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Ssu6g1740 255 Pfam C2H2-type zinc finger 78 102 - -
Ssu6g1740 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Ssu6g1740 255 PANTHER OS07G0101800 PROTEIN 39 251 - -
Ssu6g1740 255 MobiDBLite consensus disorder prediction 14 55 - -
Ssu6g1740 255 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Ssu6g1740 255 MobiDBLite consensus disorder prediction 233 247 - -
Ssu6g1740 255 Gene3D Classic Zinc Finger 68 119 - -
Ssu6g1740 255 PANTHER OS07G0101800 PROTEIN 39 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1740 Ssu-Chr6 29402735 29403502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1740 44 111 C2H2 Transcription Factor Family AT4G17810 73.239 1.63e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g1740 zf-C2H2_6 5.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1740 - - pvu:PHAVU_003G230700g 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1740 6 29402735 29403502 Ssu6g1740 6 29402735 29403502 ECH
Ssu2g2628 2 86069053 86069778 Ssu6g1740 6 29402735 29403502 PCT