Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1738 ATGGCTGGTTTGGATTTAGGAAGCGCTTCCCGCTTTGTTCAAAACCTTCAGAGACCGGACTTGCACTTGCAACAGCAGCAGCACCACCGCGATTCGGAGGAGCAAGAGACGCCGCCGAACCGCGGAACGGCGCCGTTCGAGGATGATGACCGAAGCCAAGGTCTGGAGCTAGCTTCGGCGGGTCCCGGCGACGTGGTCGGGCGTCGTCCACGTGGCAGGCCTCCGGGGTCGAAGAACAAGCAGAAGCCGCCGGTGATAATCACGCGAGAGAGCGCGAACACGCTGAGGGCGCATATTCTCGAAGTCGGAAGCGGCTCCGACGTCTTCGACTGCGTCACCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGCACCGTCACCAATGTCAGTCTCCGGCAGCCGGCGGCGGCGGGCGCGGTCGTCACCTTGCACGGGCGGTTCGAGATTCTGTCGCTGTCGGGGTCGTTCCTGCCTCCGCCGGCGCCGCCGGGGGCGACGAGTCTGACGATATACCTTGCCGGCGGGCAGGGACAGGTGGTCGGAGGGAGCGTGGTGGGGGAGCTGACGGCTGCGGGGCCGGTGATTGTGATCGCGGCGTCGTTCACGAACGTGGCTTACGAGAGGCTGCCGTTGGAGGAGGAGGAACAGCTTCAGATTCAGCCACCCGCTACGACGTCGTCTCAGGGCATGGGGAATAGCAATAATAACCCTTTCCCTGACCCTTCTTCGGGGCTTCCCTTCTTCAATTTGCCGCTTAATATGCAGAATGTTCAGTTGCCCGTGGATGGTTGGGCGGGAAACGCAGCCTCACGTCCACCACCTTTTTGA 846 0.63 MAGLDLGSASRFVQNLQRPDLHLQQQQHHRDSEEQETPPNRGTAPFEDDDRSQGLELASAGPGDVVGRRPRGRPPGSKNKQKPPVIITRESANTLRAHILEVGSGSDVFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQPPATTSSQGMGNSNNNPFPDPSSGLPFFNLPLNMQNVQLPVDGWAGNAASRPPPF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1738 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 279 - -
Ssu6g1738 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 227 - -
Ssu6g1738 281 MobiDBLite consensus disorder prediction 1 85 - -
Ssu6g1738 281 MobiDBLite consensus disorder prediction 228 249 - -
Ssu6g1738 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 209 IPR005175 -
Ssu6g1738 281 MobiDBLite consensus disorder prediction 23 54 - -
Ssu6g1738 281 Gene3D - 95 230 - -
Ssu6g1738 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 279 IPR014476 GO:0003680
Ssu6g1738 281 CDD DUF296 96 179 IPR005175 -
Ssu6g1738 281 ProSiteProfiles PPC domain profile profile. 92 228 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1738 Ssu-Chr6 29318384 29319229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1738 1 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.327 3.00e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1738 - - pvu:PHAVU_003G230600g 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2629 2 86130859 86131638 Ssu6g1738 6 29318384 29319229 PCT