Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1736 ATGGACGCTCGCGAACCGCCCCGGCCGCCGCTGCCGACCATGATGCCGGGCCCCACCTCCTACGCCTCCGCCAACATCGGCCCTAATTCCTCCTCCGCCGCCATCATGGCGCCCGCCACCGCGCGATTCCCCTTCGGCGCCGTACCGCCGCAGCAGCAGCCTCCGCCCGCGTCCGAACCCTTCCCCGCCTCCTCCGTCGCCTACGACGGCCCCTCCTCGCCGATGAAGCCCTGCTCCCTCTCCAAGAAGAAGCGCGGCCGCCCCCGGAAGTACTCCCCCGACGGTAACATTGCCCTCGGCCTCGCCCCCACCAACGTCTCCCCTCCTCCTGCCACAGCCGCCGGAGGCGGCGGCTGCGATTCGGCCGGCACGGCTTCCGCCGAGGGTCCGGCGAAGAAGCACCGCGGAAGACCACCCGGGTCTGGGAAGAAGCAACTGGATGCGCTTGGAGCTGGTGGGGTTGGATTCACTCCGCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCTTTTTCTCAGCAAGGGCCTCGGACGGTTTGTATTCTTTCTGCTATTGGTGCAATCTGTAATGTCACCCTTCGACAGCCTGCATTGTCTGGTGGTACTGCTACATACGAGGGCCGATTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAATGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCTGATGGACGCGTTTTAGGTGGCGGAGTTGCTGGAATGCTAACTGCAGCATCAGCTGTACAGGTCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCGAGCTCGAATATCATGAAATCTGGGCCTTCTTCCGCACCAACACCCCAAATGCTAGCCTTTGGTGTACCTATGACTCCAACTAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGATCATAATAGTCCTTTTAGTAGGGGCCCCCCTGGACCTGGACTCTTCAATAGTGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1083 0.5799 MDAREPPRPPLPTMMPGPTSYASANIGPNSSSAAIMAPATARFPFGAVPPQQQPPPASEPFPASSVAYDGPSSPMKPCSLSKKKRGRPRKYSPDGNIALGLAPTNVSPPPATAAGGGGCDSAGTASAEGPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVIMVESGEDITAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGSLQQSENNGERSRTCTLNVTLAGSDGRVLGGGVAGMLTAASAVQVIVGSFIADGKKSSSNIMKSGPSSAPTPQMLAFGVPMTPTSPTSQGPSTESSEEHDHNSPFSRGPPGPGLFNSASQPVHNMPMYHHPLWAGQTHQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1736 360 CDD DUF296 157 271 IPR005175 -
Ssu6g1736 360 MobiDBLite consensus disorder prediction 278 292 - -
Ssu6g1736 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 272 - -
Ssu6g1736 360 MobiDBLite consensus disorder prediction 299 314 - -
Ssu6g1736 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Ssu6g1736 360 Gene3D - 158 283 - -
Ssu6g1736 360 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g1736 360 MobiDBLite consensus disorder prediction 1 144 - -
Ssu6g1736 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 329 IPR039605 GO:0003680
Ssu6g1736 360 MobiDBLite consensus disorder prediction 18 36 - -
Ssu6g1736 360 MobiDBLite consensus disorder prediction 278 343 - -
Ssu6g1736 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 54 329 - -
Ssu6g1736 360 ProSiteProfiles PPC domain profile profile. 152 292 IPR005175 -
Ssu6g1736 360 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Ssu6g1736 360 SMART AT_hook_2 82 94 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1736 Ssu-Chr6 29298711 29303721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1736 82 360 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.258 7.35e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1736 - - var:108323770 556.599