Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1730 ATGGGTTGCACCATGAGGGAAAAGCACATCAGAGCTAATCGGAGACCTCGATCGGTGAAACCGGACTCTGATTCGTGCGACAAAGATGCCATATCGAAATCCATAGCCGAGTCTGGTCTCAAGCCTGTCAAATACCATCTGGGTCTCAACGATTATTCCCAGAGTCCAAATTCAAACCCTAATGTTGAGGAAACCGGGTGGGGTTACTGCACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGtttatatacaatgaagctGTGTCCAAGCTCGTTGCATTGGGATATGATGAGGATGTTGCTGTTAAGGCCATACTGCGAAATGGGCATTGTTATGGTGGCATGGATGTGCTTACAAATATTTTGCACAATTCCTTAGCGTTTTTgaatagtaataatagtgatGGTGCAGGTggttatagtaataataatagtgggAATTTGGATGAGTCTGAGCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCATTGGCGGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTTGGGAGGGCTAGTGCTATGGAAATTCCGGTGCCGGGTAATGGGGGCCCCGCACCGGCTACGGCCGAGGGTGGTGGCAATTCAGTTGGTGTTATGGCTCCAGCTCTGTGTAGGTTTCATGGGGGGTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAACTTGCAGCTGCAAAGAGACATTGAGTTCCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTACTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAATTGCAAGCACAGGTGAAGGCCATTGCCAGCCGGAGTACTGCACCTAATTTGGATCCTTCGGCTGTGTCCGGGATGGAAGTCCCGGCTGAGCAGTCCAGAGGAGATTCACAGAATCTTGATAGCCAAGATGCTGTGAATTCCGTGCTGAGTAAATTTCGTGATTTGAATCTTGACGAGAATTTGGAGCTTGTGGCAGAAGATCAGAAGGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCGATGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCAGCTAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTACGGATGGAAAGAGAGGAGACtcaaaaattgaagaaaggGAAACCAACACTTGAGGACACGACCATGAAGAGGCTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAACTGGACCTTGCAAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTgcaaaaagggagaaaaaatgCTTAAAGAAACTCCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTctaatgaaaaagataagatattGGAGACACAAGAAATATTGGTTCAGATTAGACAGTGTCAAAAGGAAGCTGAGGTTAAATGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTGGCACTAGTTGAGGAGGAACGCCGCTCTAAGGAAGCAGCTGAGTCTAACAATAAGAGGAAGCTTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTATTAAGACTCAAGCAGGAGCTTTCGCGCCTTAAAGCATCTGCTCAGTCTGCTGAGTTGCATAACCAATCAAGCACTTCACCTCCAAGTGACTCTGAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAAGAATTGGATAATCTGGAGGATTTTTCGGAGAAAGAAGTGAATTGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCGGTGATGAGTATGGAAGAAAAGGTAAGGCTGCTTGTCCTTGCTGCAGGGTCCAAATCCAACAGAGAATCCGAGTATTTGGGGCAAGTtcctaa 2157 0.4386 MGCTMREKHIRANRRPRSVKPDSDSCDKDAISKSIAESGLKPVKYHLGLNDYSQSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNNSDGAGGYSNNNSGNLDESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVPGNGGPAPATAEGGGNSVGVMAPALCRFHGGWGFGNGGGLDFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQVKAIASRSTAPNLDPSAVSGMEVPAEQSRGDSQNLDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVDERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPTLEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISNEKDKILETQEILVQIRQCQKEAEVKWKEELKAKEEALALVEEERRSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLKQELSRLKASAQSAELHNQSSTSPPSDSEGAKPQRETIARLLQELDNLEDFSEKEVNCNRECIICMKDEVSIVFLPCAHQVMCASCGDEYGRKGKAACPCCRVQIQQRIRVFGASS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1730 718 MobiDBLite consensus disorder prediction 316 346 - -
Ssu6g1730 718 MobiDBLite consensus disorder prediction 613 635 - -
Ssu6g1730 718 Pfam Family of unknown function (DUF6592) 82 205 IPR046527 -
Ssu6g1730 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 715 IPR013083 -
Ssu6g1730 718 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 717 - -
Ssu6g1730 718 PANTHER OS05G0141500 PROTEIN 1 717 IPR046934 -
Ssu6g1730 718 Coils Coil 444 485 - -
Ssu6g1730 718 Coils Coil 592 619 - -
Ssu6g1730 718 MobiDBLite consensus disorder prediction 613 632 - -
Ssu6g1730 718 Coils Coil 500 534 - -
Ssu6g1730 718 SUPERFAMILY RING/U-box 644 710 - -
Ssu6g1730 718 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g1730 718 Pfam Zinc finger, C3HC4 type (RING finger) 661 709 - -
Ssu6g1730 718 Coils Coil 546 583 - -
Ssu6g1730 718 ProSiteProfiles Zinc finger RING-type profile. 664 704 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1730 Ssu-Chr6 29175270 29181051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1730 603 714 C3H Transcription Factor Family AT1G73950 30.328 1.52e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1730 - - gmx:100777787 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2634 2 86226109 86229475 Ssu6g1730 6 29175270 29181051 PCT