Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1727 ATGGGAGGGGCATCACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAAGAACTAGTGGGATACTACCTCAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATTCCCGTGATTGATTTTTACAAATTCGATCCGTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGTGATTTGGAATGGTTTTTCTTTTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCAGGGTATTGGAAAGCCACTGGAAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCTCTGTTACTGGGTACCGCAAGACCTTGGTTTTCTATCTTGGGAGGGCACCTTTAGGGGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAAGCCACACCATGTTTCCAGGGTGGTTTTGCTTTGTGCCGGGTTATTAAGAAGAATGAGAAGGCAAGTGCTTCACAGGGAGAACACAAGGGCAAGAGGGCTGGAAGCAGTTCCATCAATGGGAGTGACACCTCAGTGAGATTCTCTAGGGAGCCATTCAGCATCTCTGGTGATGCTTCCTCTCAAGCAAGTCACCTGAATAATGAGAGTCGTTATTCAAGCCCTATTACTTCTCCATGTAATGTGGCTCCATTGGGAGAGTTTAACCAAGCTTCTGTGGAAACCAATCTTTCAAACTTCTGGATCTCCCCCGATATGATTCTTGATTCTTCAAAGGACTATCCTCAATTACAAGATGCAGTGGCTGAATATTTTCCACGGTATGACGTACCAAGTATGATGACCCCATGGCAATCATTGGAGCATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGGGGAAGTTGAATTAGCTGATAATCTCAGTCAAGTTGGCTGCATGTCGCCTTACTCAAGACAATGGAATTCCATGGACTTTTATGGAAATGGGGATGTCCCTTATGAAGGTTATGATCAAATTAACTCAATCTCATATCCAGAACCCTTCTAA 1041 0.4438 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSSVTGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDDLGQATPCFQGGFALCRVIKKNEKASASQGEHKGKRAGSSSINGSDTSVRFSREPFSISGDASSQASHLNNESRYSSPITSPCNVAPLGEFNQASVETNLSNFWISPDMILDSSKDYPQLQDAVAEYFPRYDVPSMMTPWQSLEHPETSSSLSYSNFNGEVELADNLSQVGCMSPYSRQWNSMDFYGNGDVPYEGYDQINSISYPEPF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1727 346 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Ssu6g1727 346 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 346 - -
Ssu6g1727 346 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Ssu6g1727 346 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Ssu6g1727 346 MobiDBLite consensus disorder prediction 171 187 - -
Ssu6g1727 346 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Ssu6g1727 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 346 - -
Ssu6g1727 346 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1727 Ssu-Chr6 29101878 29103589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1727 1 323 NAC Transcription Factor Family AT4G17980 53.354 8.04e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g1727 NAM 6.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1727 - - gmx:100792714 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1727 6 29101878 29103589 Ssu6g1727 6 29101878 29103589 ECH