Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1725 ATGGGAAGTGGAGTCTCAACCCTGTGTTGGTGCCACCGGAGCAACGAGGAAGACGTGATATTCACAGCGACGGAGCCGTTGGACGAAACCCTAGGGCACTCCTTCTGCTACGTCAGATCCTCCGCTGGCTTCCTCTCCCCCGCTCACTCCGATCGGTTCCTCTCTCCCTCCACCTCCCTCCGCTTCTCCCCGACCCACGCCCGACCCGAATTCCACGAAACCGGGTTCAAAGCCATTTCCGGAGCCTCCGTCAGCGCCAACAGCTCCCTCCCCGCCACCGTCATTCACTTGGACGAAGACGCCCTCGGAGCCGCCTCCAAGGGCAGTATCGTCAATGGCTTCGAAAGCACGGCGTCGTTTAGCGCCCTCCCGCTCCAGCCCGTTCCCCGAGGCGGGGAGCCTTTCGAGGTCAGCGGTTTCTTCCTCTCCGGTCCAATTGAGAGCAACGCCGTCTCCGGTCCTCTCCCCCCGGCCTCCGCCGACGGAGTCGGCGAGGTTCCTTTCTCGGCCCCGCTGGGCGGGCTTTATggtaagaagaagaaaaaagggatTTCCGGATTCCGGAAGAAGTTGGAGAAGAAGCGACCGTGGGTGGTGCCGGTGCTGAACTTCGCCGGGAGGAAAGAGGGCGAGACGCCGGCGGCGGCGGCGAGGAGTGAGAGCAATGTGCAGTGGGCGCTGGGGAAGGCCGGGGAGGATCGCGTCCACGTGGTGGTGTCGGAGGAGCAGGGGTGGTTGTTCGTCGGAATATACGACGGCTTCAACGGCCCCGACGCGCCGGAGTTTCTGATGGGGCACCTCTACCGCGCCGTTCACGACGAGCTTCAGGGTCTGTTCTGGGAGCTCGAAGAGGAAGAGACGAACCCCGTGACGAAGAACAACGAGGTAACGGAGAGTAAACGGCGTCGGCTGTGGGAGCTTCTGGCCGAGGACGGGCTCGACCTTTCGGGTTCGGACAGGTTCGCGTTTTCCGTCGACGACGCGCTGAGCGTGAACAAGGCCAATGCGGGGTCCGCTGTGAGCAGGAGGTGGTTGTTGCTGTCGAAGCTGAAGCACGGGTTGTCGAAGCAGAAGGAGGAGGGCAACGGGAGGGGGTGGAATCTGGGAAACgaggagaaagagaaggagaagccTTGTGGGAGGAAGAGGAGAGTGGGGCCCGTGGATCACGGGCTGGTTTTGGGTGCGCTGTCTCGGGCGCTTCAGGTGACGGAGCTTGCGTATTTGGACATGACGGACAAGCTTCTGGAGACGAATCCAGAGCTTGCTTTGATGGGTTCGTGTCTGTTGGTTGCGTTAATGAGGGATGAGGATGTGTATGTCATGAATGTTGGGGATAGCAGGGCTATTGTTGCACATTATGAGCCCAGGGAGGTTGAGGGATCGGGAGGTGTTCACTCCGGTGCCGAGAGCATAGTTGAGGAGTCCTTTGGTTTCGGTCAAACCGGGAACGAGGGTCCTGCTCAACAAATGAGGTTGGCGGCATTGCAGCTGTCTACTGACCACAGCACCAGCGTTGAAGAAGAAGTCATTAGGATTAAAAATGAGCATCCTGATGATACCCAGTGTATAGTCAATGGTAGAGTTAAAGGTCGTCTTAAGGTCACCAGAGCGTTTGGAGCTGGATTTTTAAAACAGCCGAAGTGGAATGATGCAGTACTAGAGATGTTTCGTAATGAATATATTGGCACTGCTCCATATATATCCTGCTCTCCTTCACTACATCACCATAGATTATGCCAGAGAGATCAGTTTCTGATCCTCTCATCTGATGGTTTATATCAATATCTAAACAATGAAGAAGTGGTTTCTCATGTTGAGAGCTTCATGGAAAAATTTCCAGAAGGAGATCCAGCCCAACATTTAATAGAAGAGCTGCTCCTCCGTGCAGCTAAGAAGGCTGGAATGGATTTTCATGAATTGCTGGATATCCCACAAGGAGATCGGAGGAAGTATCATGATGATGTTACTGTAATGGTGATATCACTTGAAGGGAGAATCTGGAAATCGTCGGGGAAGTATCCATGA 2028 0.5459 MGSGVSTLCWCHRSNEEDVIFTATEPLDETLGHSFCYVRSSAGFLSPAHSDRFLSPSTSLRFSPTHARPEFHETGFKAISGASVSANSSLPATVIHLDEDALGAASKGSIVNGFESTASFSALPLQPVPRGGEPFEVSGFFLSGPIESNAVSGPLPPASADGVGEVPFSAPLGGLYGKKKKKGISGFRKKLEKKRPWVVPVLNFAGRKEGETPAAAARSESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGHLYRAVHDELQGLFWELEEEETNPVTKNNEVTESKRRRLWELLAEDGLDLSGSDRFAFSVDDALSVNKANAGSAVSRRWLLLSKLKHGLSKQKEEGNGRGWNLGNEEKEKEKPCGRKRRVGPVDHGLVLGALSRALQVTELAYLDMTDKLLETNPELALMGSCLLVALMRDEDVYVMNVGDSRAIVAHYEPREVEGSGGVHSGAESIVEESFGFGQTGNEGPAQQMRLAALQLSTDHSTSVEEEVIRIKNEHPDDTQCIVNGRVKGRLKVTRAFGAGFLKQPKWNDAVLEMFRNEYIGTAPYISCSPSLHHHRLCQRDQFLILSSDGLYQYLNNEEVVSHVESFMEKFPEGDPAQHLIEELLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1725 675 ProSiteProfiles PPM-type phosphatase domain profile. 216 663 IPR001932 -
Ssu6g1725 675 SMART PP2C_4 216 661 IPR001932 -
Ssu6g1725 675 PANTHER PROTEIN PHOSPHATASE 2C 14 290 IPR015655 GO:0004722|GO:0006470
Ssu6g1725 675 PANTHER PROTEIN PHOSPHATASE 2C 370 673 IPR015655 GO:0004722|GO:0006470
Ssu6g1725 675 CDD PP2Cc 389 663 IPR001932 -
Ssu6g1725 675 Pfam Protein phosphatase 2C 400 631 IPR001932 -
Ssu6g1725 675 PANTHER PROTEIN PHOSPHATASE 2C 29 14 290 - -
Ssu6g1725 675 PANTHER PROTEIN PHOSPHATASE 2C 29 370 673 - -
Ssu6g1725 675 Gene3D - 205 670 IPR036457 -
Ssu6g1725 675 MobiDBLite consensus disorder prediction 357 382 - -
Ssu6g1725 675 SUPERFAMILY PP2C-like 228 664 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1725 Ssu-Chr6 29063218 29067555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1725 1 674 PP2C-type Phosphatase Gene Family AT2G35350 55.875 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1725 - - gmx:100781535 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2637 2 86252922 86257266 Ssu6g1725 6 29063218 29067555 PCT