Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1722 ATGGGTTGCCTACACTCCAAAACCGCTCATATTCACTCTCCTGAAGACCCCTCCACTGCCTTACCAGACCCCAAAAAACCCGATCCAGgGAATGGTGGGGATGATGTTGATCAAGAGTGTCAGGTTCCAGCATTCAAAGAGTACGGTCTGAGTGAACTTCGAAGGGCCACACATGAGTTCAGCACAGATTACATTGTTTCTGAGAGTGGTGAGAAAGCTCCCAATGTGGTCTATAGAGGGAAGCTTGAGAACAATCGGTTAGTTGCTGTTAAGCGCTTCTCCAAACTGTCTTGGCCTGATGCTCAACAGTTCATGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAGACTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAGAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAACATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTCAGAGTTGCATACCATGTTGCCCAGGCACTAGATCACTGCAGCTTGGAAAACCGGAAAATATATCACGATCTGAATGCATATAGGATTCTTTTTGATGAGGATGGTGATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGCACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGGCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCATATTCCTCCAAGCCATGCTTTGGATCTAATTAGAgggaaaaatgttttgttgttgatgGACTCTTCTCTAGAAGGGCAATATGCAAACGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGATATTCAGTTTCTTCTTACTGCTGTTGCACCTCTTCAAAAGCAGAAAgagGTAGCATCTCATGTGTTAATGGGCCTAACTAAAAACATGGCAGTGCTACCGACCATGCTTTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCatgatatattgttaaaaacaGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTCCAAGAATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTATTCTAAGTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTCTTTGCAAGGAGAGCCTTCTCCTACTTGATGAATGATCTGGCAGAACTTGCATTAAGGGACGCCATGCAGGCACAGGTATGCATACCTGATTGGCCAACTGCATTCTACCTGCAGGCTCTTGCTCTCTCAAAGCTGGGAATGGAAACTGATGCTCATGACATGCTTAATGATGGGGCTGCCTTTGAAGCAAAGAGGTCTAACAGCTGGCGTggttaa 1491 0.4279 MGCLHSKTAHIHSPEDPSTALPDPKKPDPGNGGDDVDQECQVPAFKEYGLSELRRATHEFSTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSLENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQFEARERPDIQFLLTAVAPLQKQKEVASHVLMGLTKNMAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDLAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAHDMLNDGAAFEAKRSNSWRG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1722 496 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1722 496 MobiDBLite consensus disorder prediction 1 38 - -
Ssu6g1722 496 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Ssu6g1722 496 Gene3D Tetratricopeptide repeat domain 386 495 IPR011990 GO:0005515
Ssu6g1722 496 Pfam Protein tyrosine and serine/threonine kinase 76 311 IPR001245 GO:0004672|GO:0006468
Ssu6g1722 496 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK2 1 495 - -
Ssu6g1722 496 SUPERFAMILY Protein kinase-like (PK-like) 70 314 IPR011009 -
Ssu6g1722 496 SUPERFAMILY TPR-like 387 485 IPR011990 GO:0005515
Ssu6g1722 496 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 495 IPR045845 GO:0004672|GO:0009742
Ssu6g1722 496 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1722 Ssu-Chr6 29013110 29018906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1722 5 317 Glycoside Hydrolase AT3G07070 32.641 8.42e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu6g1722 PK_Tyr_Ser-Thr 7.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1722 K14500 - gmx:100793576 970.304