Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1715 ATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCTGTGGAACAATTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAGTCAATGAAAGTGGAGGGATTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAAGACCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGCTCAAAGACCAATTATGGCCTTTCCTCCATATCATTATAATCATACCCTTCCTCTGGCTCCTGTGTATCCTATGTGGGGACAATCTGGTAGTCAAACGGCTGGCATGCAGATTTGGGGCTCTCCTGGTTATCCCATGTGGCAGCCTACTGCTGAAAGTTGGCACTGGAAACCATTTCCAGGGGTGCATGCAGATGCATGGGGCTGCCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTGTTTTCCCTACTATCAGAATATGCCTGCATTGCTCATTGCTGACGCAGTGGATCATACATTTAGCATGCCACGAAGTTCCTTCGAGCATTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAATAAGCAAACCATGGCTACCCTTGCCCTTGGGTCTCAAACCTCCTTCCACAGATAGTGTGTTGGCTGAGCTTTCGAGGCAAGGCATTTCCAGCATCCCTCCTGGCAGCAAGGGTTCCAGTTCTGTCTGA 729 0.476 MKVDWTPELHKKFVKAVEQLGIDQAIPSRILESMKVEGLTRHNVASHLQKYRMHKRQILPKEEDRKWLNQRERSYCAQRPIMAFPPYHYNHTLPLAPVYPMWGQSGSQTAGMQIWGSPGYPMWQPTAESWHWKPFPGVHADAWGCPVLPVPPPQAPCFPYYQNMPALLIADAVDHTFSMPRSSFEHYPAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPGSKGSSSV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1715 242 Gene3D - 1 58 - -
Ssu6g1715 242 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 240 IPR044825 GO:0003700|GO:0045893
Ssu6g1715 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Ssu6g1715 242 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Ssu6g1715 242 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 2 55 IPR006447 GO:0003677
Ssu6g1715 242 Pfam Myb-like DNA-binding domain 3 52 IPR001005 -
Ssu6g1715 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1715 Ssu-Chr6 28867746 28869858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1715 2 236 Response Regulator Gene Family AT4G18020 52.500 1.95e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu6g1715 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1715 - - ccaj:109791214 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2650 2 86431613 86436697 Ssu6g1715 6 28867746 28869858 PCT