Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1714 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGCGTTTCTGCTGCTGAGATAGGAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAGGCCTTGTCAGCGATCTCAAGTAGACCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGCAGCCAGGGAGGTTTCAAATTTCTAGAGAATGCCAAAGACTTGCCAACCATTATGACTTCAAGCAATCATTGCTTGAACACCATGATGAAGTGCATAGCGcttgGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATTTGGCAGCACGTGGTTCACAAGGCATTCAATGCTGGGGCAAGCGTCGTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGTGTCTATGTTGCAGCTCCAAACAGACAATGAACAATGTGAAAGTAGAGTCTCCATTGTGATAGAGAAAGTGTCCAGGTTTACAGATAATGATCATGAGCAGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGGCAAGGAACAAGATTGTTGGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGCGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATATAGAAATTTGAATGCTGAAACTGAAAGTTCTCAACAAAGgaaatgtgaaattaatttgGTTAGGGAGGAAGTGGATTTAGTTGATGCTTCCAAGGGTGAGAGTGTTGCTTCTCCACATACACAAAAAGAAAGGTTCTAA 861 0.4193 MVCTANDLQEWKDFPKGLKVLLLEGDSVSAAEIGAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSSNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVVSESLKPVKESVVSMLQLQTDNEQCESRVSIVIEKVSRFTDNDHEQSPGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTYRNLNAETESSQQRKCEINLVREEVDLVDASKGESVASPHTQKERF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1714 286 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Ssu6g1714 286 MobiDBLite consensus disorder prediction 181 255 - -
Ssu6g1714 286 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Ssu6g1714 286 SMART REC_2 18 128 IPR001789 GO:0000160
Ssu6g1714 286 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 283 IPR044825 GO:0003700|GO:0045893
Ssu6g1714 286 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 283 - -
Ssu6g1714 286 MobiDBLite consensus disorder prediction 193 222 - -
Ssu6g1714 286 Gene3D - 18 142 - -
Ssu6g1714 286 SUPERFAMILY CheY-like 16 134 IPR011006 -
Ssu6g1714 286 MobiDBLite consensus disorder prediction 223 237 - -
Ssu6g1714 286 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1714 Ssu-Chr6 28864886 28867662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1714 1 279 Response Regulator Gene Family AT4G18020 54.098 4.85e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g1714 Response_reg 7.4e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1714 - - gmx:100777535 488.034