Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1704 ATGGCTCTCTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATGCACCGATTGTTTTGTTCAATCTCGTGCAGCATACTACCCAAATTCTGAACAAAATGGCACCGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCGTTAATGGTGGGGACGTTTCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGCGCCTGTTATCAGGTGAGATGTACCAATAGTGCTTATTGCTCAGGGAACGGTGTCACTGTAGTTATAACCGACCAAGGCTCAAGTGATAACACTGACTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCTGAACACTGACGCAGCTGCTTCTCTATTAGCTCTTGGCGTAGTTGATATTGAATATAGACGTGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATAGATGAAAGCAGCAACAACCCTCACTATTTGGCTTTTGTCATATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTGCAGCTTTGCGAGACTCAGAACTTCGTTTGCAAGTTACTGGATCGGAGTCATGGGGCAGTCTGGACCACAACTGCTCCACCGAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTCCTGAAGAAGAGGGAGAAGAAACATGGGTCGTTCCTGTTAATAACATACCACAAGACTGGAAGGCTGGACAAACATACGACTTAGGGGTACAAGTGGACCAATAG 765 0.4497 MALSLLCPLLATFLFMQTLADTSCTDCFVQSRAAYYPNSEQNGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAYCSGNGVTVVITDQGSSDNTDFILSQRAFGGMALNTDAAASLLALGVVDIEYRRVSCSYPNKNITVKIDESSNNPHYLAFVIWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLSLRMLFSPEEEGEETWVVPVNNIPQDWKAGQTYDLGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1704 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Ssu6g1704 254 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Ssu6g1704 254 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ssu6g1704 254 Pfam Expansin C-terminal domain 152 230 IPR007117 -
Ssu6g1704 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 253 - -
Ssu6g1704 254 Pfam Lytic transglycolase 66 140 IPR009009 -
Ssu6g1704 254 PANTHER EXPANSIN-B3 4 253 - -
Ssu6g1704 254 Gene3D - 147 252 IPR036749 -
Ssu6g1704 254 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Ssu6g1704 254 Gene3D - 16 146 IPR036908 -
Ssu6g1704 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Ssu6g1704 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 248 IPR007117 -
Ssu6g1704 254 SUPERFAMILY PHL pollen allergen 150 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1704 Ssu-Chr6 28721783 28723648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1704 9 247 Expansin Gene Family AT4G17030 43.154 2.66e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1704 - - gmx:100812555 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2660 2 86532406 86532877 Ssu6g1704 6 28721783 28723648 PCT