Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1693 ATGAAGTGTTTCTTCTTCAAAGAGAAGTGCAAATCCGCCCCAGAATTGCACAAGAAGAAGAACCCCGGCGTGAACCGCGCCGCCAACTCCACCGGCTCCGTATCGTCGCCTAAGAGCGTCAAAGACTTGTACAGAGAGAAAGAGCACAGCTTCAGAGTTTTCACCTTGCAAGAGCTGAGAGATGCCACCAACGGTTTCAATAGGATGCTCAAGCTTGGAGAAGGGGGTTTCGGGAGTGTGTATAAAGGATCCATTGTGCCACCCGATGGACAAGGTGATCCAGTTGTAGTTGCTATTAAAAGACTCAACACGCGTGGCTTCCAgGGTCATAAAGAATGGCTCGCTGAAGTTCAATTTCTCGGCATTGTTAATCACCCAAATTTGGTGAAGCTTTTGGGATACTGCTCCGTGGATGGGGAAAGAGGAATCCAACGGCTGTTGGTGTATGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTTTTCAATAAAACTTTGCCAACCCTGCCTTGGAAAACGAGATTGGAGATCATGCTTGGTGCTGCTCAAGGGTTAGCGTATCTACACGAGGGACTGGAAATTCAGGTGATCTACCGGGATTTCAAATCTTCAAACGTTCTATTGGATGCGGATTTCCACCCAAAGCTCTCAGATTTTGGTCTTGCTAGAGAAGGACCACAAGGCGATCAGACTCATGTATCCACTGCGGTAGTTGGGACACAGGGATATGCTGCACCAGAGTATATTGAAACGGGTCATCTGAAAGTTCAGAGTGACATGTGGAGTTTTGGTGTTGTACTATATGAGATCCTCACAGGAAGGAGGTCATTGGAAAGAAACCGTCCCACAGCAGAACAAAAGCTTCTAGATTGGGTCAAACAGTACCCTGCTGACACCGGCAGATTCAGCATGATAATGGACCCACGTCTCAGGAACCAGTATTCTCTTCCTGCAGCTCGCAAAATGGCAAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCCATGAGTCAGATAGTGGAAGGCTTGAAGCAAGCATTGCAATATTCAGAAACTCCAAACACTTCTCGAGACATTGCTGAATCCTCCTCATCGAGGTCTAAATTGGTCCGAAAAAGTAAAtag 1137 0.4688 MKCFFFKEKCKSAPELHKKKNPGVNRAANSTGSVSSPKSVKDLYREKEHSFRVFTLQELRDATNGFNRMLKLGEGGFGSVYKGSIVPPDGQGDPVVVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNKTLPTLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTGRFSMIMDPRLRNQYSLPAARKMAKLADSCLKKNPEDRPSMSQIVEGLKQALQYSETPNTSRDIAESSSSRSKLVRKSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1693 378 PANTHER RECEPTOR-LIKE KINASE PLANT 11 354 - -
Ssu6g1693 378 CDD STKc_IRAK 72 349 - -
Ssu6g1693 378 PANTHER OS01G0588500 PROTEIN-RELATED 11 354 - -
Ssu6g1693 378 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Ssu6g1693 378 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
Ssu6g1693 378 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1693 378 Gene3D Transferase(Phosphotransferase) domain 1 152 372 - -
Ssu6g1693 378 MobiDBLite consensus disorder prediction 353 367 - -
Ssu6g1693 378 Pfam Protein kinase domain 68 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1693 378 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Ssu6g1693 378 MobiDBLite consensus disorder prediction 353 378 - -
Ssu6g1693 378 MobiDBLite consensus disorder prediction 24 38 - -
Ssu6g1693 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Ssu6g1693 378 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1693 Ssu-Chr6 28484551 28486644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1693 3 347 Glycoside Hydrolase AT3G07070 42.297 4.76e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g1693 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1693 - K00924 gmx:100786966 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1693 6 28484551 28486644 Ssu6g1693 6 28484551 28486644 ECH
Ssu2g2672 2 86925607 86927847 Ssu6g1693 6 28484551 28486644 PCT