Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1690 ATGACTAAGAGAACAAAGAAGGCCGGCATTGTTGGAAAATACGGTACCCGTTATGGTGCCAGTCTGCGGAAGCAGATTAAGAAGATGGAAGTTAGTCAACACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGGAAAGCTGTAGGAATATGGGGATGCAAGGACTGCGGTAAAGTGAAAGCAGGAGGTGCTTACACTTTGAATACCGCAAGTGCCGTGACTGTTCGGAGCACCATCAGGAGGTTGAGGGAACAAACTGAGGGTTAA 279 0.4552 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTEG 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1690 92 Pfam Ribosomal L37ae protein family 4 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Ssu6g1690 92 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
Ssu6g1690 92 TIGRFAM eL43_euk_arch: ribosomal protein eL43 1 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Ssu6g1690 92 PANTHER ZGC:171772 1 92 - -
Ssu6g1690 92 SUPERFAMILY Zn-binding ribosomal proteins 10 82 IPR011332 GO:0006412
Ssu6g1690 92 Gene3D - 1 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Ssu6g1690 92 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1690 Ssu-Chr6 28449979 28450868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1690 1 91 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.407 4.19e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1690 K02921 - gmx:100499850 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1690 6 28449979 28450868 Ssu6g1690 6 28449979 28450868 ECH