Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1684 ATGGAGGAACGGTATGAGCCATTGAAGGAGCTTGGTTCTGGGAATTTTGGTGTGGCCAGGTTGGCCAAAGACAAGAAGACTGGAGAGCTTGTTGCGGTCAAATACATAGAGAGGGGTAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGGTCTTTAAGGCATCCAAATATAATCAGGTTCAAAGAGGTCTTGCTGACCCCTACACATTTAGCTATCGTCTTGGAGTTTGCTTCAGGTGGGGAACTTTTTGAGAGGATATGTAGTGCTGGTCGATTTAGCGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTCCTGGACGGAAATCCATCTCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTCTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTATGATGGAAAGATTTCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTAGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATACCCGACTATGTTCGTGTTTCTTCTGACTGTAGGAATCTTCTCTCTCGCATCTTTGTTGCCGATCCTGCCAAGAGGATCACCATCCCAGAGATAAAACAGAACCCTTGGTTTCTGAAGAATTTGCCTACGGAGATCATTGAAGCtgaaagaaaaggttttgaGGAAACAACGAAAGACCAACCAAGTCAGAGGGTCGAAGAAATCATGAGGATCATACAAGAGGCAAGGACACCAGGACAAGGATCCAAAGCTGGTGATGGTGGACAAGCTGGCACTGGATCATTAGATGTTGAAGATGATGAGGAAATTGATGTTAGTGGCGACTATGAACATGTGTGA 1011 0.4283 MEERYEPLKELGSGNFGVARLAKDKKTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEFASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSSDCRNLLSRIFVADPAKRITIPEIKQNPWFLKNLPTEIIEAERKGFEETTKDQPSQRVEEIMRIIQEARTPGQGSKAGDGGQAGTGSLDVEDDEEIDVSGDYEHV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1684 336 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Ssu6g1684 336 CDD STKc_SnRK2 4 260 - -
Ssu6g1684 336 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 329 - -
Ssu6g1684 336 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1684 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Ssu6g1684 336 MobiDBLite consensus disorder prediction 298 336 - -
Ssu6g1684 336 PANTHER SERINE/THREONINE KINASE 3 329 - -
Ssu6g1684 336 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Ssu6g1684 336 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Ssu6g1684 336 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Ssu6g1684 336 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1684 336 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1684 Ssu-Chr6 28288219 28291700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1684 4 279 CBL-interacting serine-threonine protein kinases AT4G24400 42.105 1.89e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu6g1684 Pkinase 1.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1684 K14498 - gmx:100782714 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1684 6 28288219 28291700 Ssu6g1684 6 28288219 28291700 ECH
Ssu2g2678 2 86990169 86993205 Ssu6g1684 6 28288219 28291700 PCT