Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1676 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTTGCTTGTGTCATACTGCTTTTACCTGCACTGTGTAGCTCACAGGACTCTTTTACGGATTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGAAATCCAAGGGGAGCTTGTGGCTTTGCCGAATATGGAAGGACAGTGAATGATGGAAGTGTGGCAGGCGTGTCTAGGCTATGGAGGAATGGAAGTCGCTGTGGTGCATGCTATCGGGCAAGGTGCAAAATACCCCAATATTGCGATGAAAATGGAGCATACGTGGTGGTAACCGACTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTACTCAAGATTGGGGCGCAACGCAGATGCATCTGCAGAGTTGTTCAAATACGGTGTAGTGGATATTGAATACAGAAGGGTCCCCTGTAGTTACACTGGCTATAACGTCGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTGGATGGAACATATGACGTCACTGCTGTGGAGTTGTGGCAGGAAGACTTCCAAAAATGGAGGCCACTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCACCAAGTGGTGAAATCTACTTGAGGTTCCAAGTGAGTGGCAGTGCAGGGTTTTATTGGGTGCAGTCCAAGAATGCTATCTCTAGTGATTGGAGGGCCGGAGCAACATATGACACCATGGTTCAGcttaattag 756 0.4788 MELSFKHQLGLACVILLLPALCSSQDSFTDSRATYYGSPDCYGNPRGACGFAEYGRTVNDGSVAGVSRLWRNGSRCGACYRARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELWQEDFQKWRPLRRAFGAMFDYSNPPSGEIYLRFQVSGSAGFYWVQSKNAISSDWRAGATYDTMVQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1676 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Ssu6g1676 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Ssu6g1676 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Ssu6g1676 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Ssu6g1676 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Ssu6g1676 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ssu6g1676 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Ssu6g1676 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Ssu6g1676 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Ssu6g1676 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Ssu6g1676 251 Gene3D - 19 145 IPR036908 -
Ssu6g1676 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Ssu6g1676 251 PANTHER EXPANSIN-B3 4 251 - -
Ssu6g1676 251 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Ssu6g1676 251 Gene3D - 146 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1676 Ssu-Chr6 28067212 28069134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1676 1 250 Expansin Gene Family AT4G17030 58.167 1.46e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1676 - - gmx:100779487 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2687 2 87073993 87076378 Ssu6g1676 6 28067212 28069134 PCT