Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1674 ATGCCACAATACTGCAATGCGAAAGGAATATACGTGGTGGCAACAGACTATGGTGCGGGAGACAGAACAGACTTCATAATGAGCAAACGTGCCTTCACGGGATTGGGACGCAACGCAGCTGCTTCTGCAAAACTGTTCAAAGACGGAGTGGTGGATATTGCATTCAAAAGGGTCCCCTGTAGATACCCTGGTAACATTAAGCTCCGTGTCCAAGAAAGCAGCAAAAACCCTGGCTACTTTGCAGTTGTGATTCTAAACGTTAATGGAGAAAGCGACATCACTGCTGTTGAGATGTGGCAGAGAGGGCAGCGACGATGGGAGCCCCTGCGCAGGGTGTATGGGGCAGTGTTTGACTTTGCTAACCCACCCAGTGGTGAAATCCGCTTGAGGTTTCAAGTAGGCTATAAATACTGGCTGCTGCCCAAGATCCCTGTTCCTGCTAATTGGAAGGCCGGAGCTACTTATGACACCAAAGTTCAGccttattag 489 0.4867 MPQYCNAKGIYVVATDYGAGDRTDFIMSKRAFTGLGRNAAASAKLFKDGVVDIAFKRVPCRYPGNIKLRVQESSKNPGYFAVVILNVNGESDITAVEMWQRGQRRWEPLRRVYGAVFDFANPPSGEIRLRFQVGYKYWLLPKIPVPANWKAGATYDTKVQPY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1674 162 Pfam Expansin C-terminal domain 66 139 IPR007117 -
Ssu6g1674 162 PANTHER EXPANSIN-B3 1 160 - -
Ssu6g1674 162 Gene3D - 61 158 IPR036749 -
Ssu6g1674 162 PRINTS Expansin/Lol pI family signature 106 120 IPR007118 GO:0005576
Ssu6g1674 162 PRINTS Expansin/Lol pI family signature 143 157 IPR007118 GO:0005576
Ssu6g1674 162 PRINTS Expansin/Lol pI family signature 48 64 IPR007118 GO:0005576
Ssu6g1674 162 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 65 IPR007112 -
Ssu6g1674 162 SUPERFAMILY Barwin-like endoglucanases 2 65 IPR036908 -
Ssu6g1674 162 Gene3D - 1 60 IPR036908 -
Ssu6g1674 162 PANTHER EXPANSIN-B1-LIKE PROTEIN 1 160 - -
Ssu6g1674 162 SUPERFAMILY PHL pollen allergen 65 156 IPR036749 -
Ssu6g1674 162 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 78 157 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1674 Ssu-Chr6 28027684 28028172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1674 1 159 Expansin Gene Family AT4G17030 44.172 3.80e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1674 - - gmx:100776830 260.766