Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1673 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTACTGCAACGAATATACTAAATCCAGAGCAACCTTTTATAGTACCCCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGCGAATATGGAAGGAAGATGGATGGGTATGATGGAAGGGTCTCAGGGGTGTCTGGGCTATGGAACAATGGAGCTGGCTGTGGAACATGCTATTGGGTAAGGTGCAACATGCCAAATGTGTGCGATGTGAAAGGAGTATACCTAACGGTAACAGACCAAGGTTATGGAGACAGAACAGACTTTGTCATGAGCCTACGCGCCTTCACAAAATTGGGAGTCAATGATAATGCAGCTGCAGAGCTTAAGAAACTCGGGACAGTGGATATTGAATACGCAAGGGTCCCCTGTACATTCGACGGCAATATCTTGTTTCATATCCAGGAAACTAGCAGCAACCCTGGTTACTTTGCTATGGTGATTCTCGATGTAAATGGAATACACGACGTCACTGCTGTTGAGATGTGGCagATGGAGTCCCGACAATGGAAGCCACTTAATAGGAATTATGGGGTAGTGTTTGACTTTCCTAACCCACCGAGTGGTGAAATTCGCTTGAGGTTTATGGTGAGTGGCATGTCTGACTGGGTGGACCCCAAGATTGTCATACCTAGTAATTGGAAGCCAGGAGCTACTTATACCACCAATGTTCAGCTTAAATAG 750 0.4587 MELSFKHQLGLVCVILLFPALCYCNEYTKSRATFYSTPDGYGTPTGACGFGEYGRKMDGYDGRVSGVSGLWNNGAGCGTCYWVRCNMPNVCDVKGVYLTVTDQGYGDRTDFVMSLRAFTKLGVNDNAAAELKKLGTVDIEYARVPCTFDGNILFHIQETSSNPGYFAMVILDVNGIHDVTAVEMWQMESRQWKPLNRNYGVVFDFPNPPSGEIRLRFMVSGMSDWVDPKIVIPSNWKPGATYTTNVQLK 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1673 249 Gene3D - 148 249 IPR036749 -
Ssu6g1673 249 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Ssu6g1673 249 Pfam Expansin C-terminal domain 152 233 IPR007117 -
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ssu6g1673 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Ssu6g1673 249 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Ssu6g1673 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Ssu6g1673 249 Pfam Lytic transglycolase 65 141 IPR009009 -
Ssu6g1673 249 Gene3D - 19 147 IPR036908 -
Ssu6g1673 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 244 IPR007117 -
Ssu6g1673 249 PANTHER EXPANSIN-B3 4 249 - -
Ssu6g1673 249 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1673 Ssu-Chr6 27986966 27989134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1673 1 248 Expansin Gene Family AT4G17030 43.254 4.64e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1673 - - gmx:100777265 427.557