Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1671 ATGAGCCTTGCAATAGGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTAGGGCAGAAAATGTTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAGAgcatatcattaaataagaacaaagaAGTGAAATTGGTCAAACGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTTGTCCCTGATTATAATCAAGGATTCCGAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCACGGATGCCAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACGAGAGACCTGTGTTCTATTCTTCATGAACAACAGTCATATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTCGAAAGTGATACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATTGCTTGTGATGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCATGTTCTGGCACGCATAGTGATCGTGGTGGCATGAACTTCTCATCTCATGGAGTTGAAAAGATCAGAAACTCAGCTGGCCAAATCATGCAACAAGAGCAACTTGAAAGggACAAGTCTCAGCATGAAAAACTACAAGTTCCTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTATGAGAAACTTGACAAATGAAGATCAGCAGCAATTACTGAAGTACCTCCCTGTGGTTGATACTGCTAAATTACCAGATAGCCTTAAAAACATGTTCAATAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTCGGGGAAGGTGTCTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGAGTGGAAGACATTGAAAAGGCTCGTGTCATCTAATCTGTCAAAATCAAAATGGGTGGAACACTATAATTTTCTCAAGAAATCTGAAAACAAAGCTGAAAAAGCTATCGATCCAGGATCTACTGGTATGGAATCAAGTAATGTTACAAATGGCAAGAGAATGCGTGAGTGTGACAGccaaatcaaaattttccaGAATTGA 1296 0.402 MSLAIGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGFRKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCSILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIACDEESEASSLSVDNKQCLMNEAYSCSGTHSDRGGMNFSSHGVEKIRNSAGQIMQQEQLERDKSQHEKLQVPGNHDSPLCLIDLNDVVNYEEFMRNLTNEDQQQLLKYLPVVDTAKLPDSLKNMFNSFQFKENLTYFQQLLGEGVFDISLLGAKPEEWKTLKRLVSSNLSKSKWVEHYNFLKKSENKAEKAIDPGSTGMESSNVTNGKRMRECDSQIKIFQN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1671 431 Pfam GATA zinc finger 6 33 IPR000679 GO:0006355|GO:0043565
Ssu6g1671 431 PANTHER OSJNBB0038F03.10 PROTEIN 6 428 IPR044589 -
Ssu6g1671 431 CDD ZnF_GATA 7 47 IPR000679 GO:0006355|GO:0043565
Ssu6g1671 431 Gene3D - 3 78 IPR013088 GO:0006355|GO:0008270
Ssu6g1671 431 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 38 - -
Ssu6g1671 431 Gene3D - 276 374 IPR038108 -
Ssu6g1671 431 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Ssu6g1671 431 Pfam Asx homology domain 271 365 IPR028020 -
Ssu6g1671 431 MobiDBLite consensus disorder prediction 398 417 - -
Ssu6g1671 431 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 6 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1671 Ssu-Chr6 27959412 27963191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1671 7 427 C2C2-Gata Transcription Factor Family AT4G17570 53.241 4.08e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu6g1671 ASXH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1671 - - gmx:100799745 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2691 2 87111240 87114530 Ssu6g1671 6 27959412 27963191 PCT