Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1662 ATGGAAAGGGCAATAACAGGAAGAATTACCAGGGGTGGAATTCTCTGCAGCTGTTGCCAAGGAGAAACATCAGTGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAACCCTATAAACATATTTACCTCCCCAGAAAACACAAATGCCTCGAGGAGTGCCAGATTGATGCTTGGCAAGATACCAGAGAACAAAAACGCTGGTGTAAGTTTTTGTATGTGCCGAAAGAAACTGCTGCAGACCAAAATGATGATGCTTGTTCAGTCTGTGGCGATGGGGGAGACTTAATCTGCTGTGACAAGTGTCCCTCCACATATCATCTATCTTGCATGAATATAGAGAGGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAATTCTGTGGGCTGGttgtagagaaaaaagaaggctTCAAGTGCTCCCAATGTGACAAGAAGTGTCATTGGGAGTGCTTTCAAGAATTCTCAAAAGAAAATCTGGACCTTAACCCTTCAAGATCTTATTGTGGGCCAGGTTGCCAAGAGATATATGAGAAATTGGAGGTCTCTCTCGGAATCAGAAATGATAATTTGGCAAAATACTCTTGGAGAGTTATCCACCAAATGGATATACCCAAGGACAAGGAGGTTGCTGCAGCTATGAATCTATActtagaaaataattcaaaggTTGCAGTTACTTGGATGTTAATGAATGAAGCTTTTGAGACAATAACTGACAGGCATACGGGCATCAACATCATTCAAAGTATAGTTTACAGTTGTGGGTCAAACTTAACCAGGATTGATTTTAGCCGTTTTTATATGTTTGTCCTGGAGAAAGATGACGAGATCATTGCTGCAGCTTCTATAAGATTTCATGGGAGAGGAATTGCAGAAATGCCATTTATTGCTACAGAAATGGCATACAGGGGCCAAGGAGTTTGCCAGGAATTAATAAGGGTAATTGAATCGTTCCTATGCGACCTTAAAGTCAAAAACTTGGTCATTCCATCTGCTCTGGAGACTTCTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGCGAAGAGCTGAAGAAAGAAATATcctcctataatattttgatgtTCCCCTGTGCTTTAAGACTGTACAAGAACTTGTCAGCAAGCATAGCAGACGGTGGTGATGACATTGAAGACGATCAAACTGACATTAAGAATAACCTGGAACCACAAAAAGAGCAGGCAGAGGCTACTGCTAGACTTGAACATGGACCCTCATCTGGATGA 1266 0.4005 MERAITGRITRGGILCSCCQGETSVWTFEKHAGSDLRQPYKHIYLPRKHKCLEECQIDAWQDTREQKRWCKFLYVPKETAADQNDDACSVCGDGGDLICCDKCPSTYHLSCMNIERVPQNDWFCPYCVCKFCGLVVEKKEGFKCSQCDKKCHWECFQEFSKENLDLNPSRSYCGPGCQEIYEKLEVSLGIRNDNLAKYSWRVIHQMDIPKDKEVAAAMNLYLENNSKVAVTWMLMNEAFETITDRHTGINIIQSIVYSCGSNLTRIDFSRFYMFVLEKDDEIIAAASIRFHGRGIAEMPFIATEMAYRGQGVCQELIRVIESFLCDLKVKNLVIPSALETSDMWKRKYNFTEVSEELKKEISSYNILMFPCALRLYKNLSASIADGGDDIEDDQTDIKNNLEPQKEQAEATARLEHGPSSG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1662 421 Gene3D - 254 367 - -
Ssu6g1662 421 PANTHER GNAT FAMILY ACETYLTRANSFERASE 4 392 - -
Ssu6g1662 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 173 IPR013083 -
Ssu6g1662 421 MobiDBLite consensus disorder prediction 402 421 - -
Ssu6g1662 421 Pfam Tify domain binding domain 7 57 IPR032308 -
Ssu6g1662 421 SMART PHD_3 129 178 IPR001965 -
Ssu6g1662 421 SMART PHD_3 87 128 IPR001965 -
Ssu6g1662 421 Pfam PHD-finger 88 130 IPR019787 -
Ssu6g1662 421 SUPERFAMILY FYVE/PHD zinc finger 82 136 IPR011011 -
Ssu6g1662 421 ProSiteProfiles Zinc finger PHD-type profile. 85 130 IPR019787 -
Ssu6g1662 421 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 233 380 IPR000182 GO:0016407
Ssu6g1662 421 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 260 355 IPR016181 -
Ssu6g1662 421 CDD NAT_SF 273 334 - -
Ssu6g1662 421 PANTHER PHD FINGER PROTEIN 12 4 392 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1662 Ssu-Chr6 27767094 27769402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1662 5 381 PHD Transcription Factor Family AT4G14920 43.342 1.52e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu6g1662 TDBD 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1662 - - pvu:PHAVU_009G190800g 662.529