Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1658 ATGTACGAACAGAGTCCCTACGAATCGGACCTGGCACTCTTGGATTCAATTCGCCGCCACTTGCTGGGCGAGTCCGAGTCCATATTCGGAGCCCCGACAAGCGTGTCGGGTCGGAGCTCCAGCTGCAGCAGCTTGTACTCGTGTTTGAGCGACAATTGGGGCGAGCTTCCGTTTAAGGAAGACGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAGCGTGGGGTGGGTCCCGTCGCTGGATGCCGGGTCGCCCGAGAGCGTGTCGTCGGTACCCCCGTTGCCGCTGCCGCCGGTGACGGAGGAGAAGAAGGTCTCGCCGGCGAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTCGGAACGTTCGAGACGGCGGAGGACGCGGCGCTGGCGTACGACCGCGCCGCGTACCGGATGCGGGGGTCGAGGGCGCTGCTGAATTTTCCGCTGCGGGTTAACTCCGGCGAACCCGACCCGGTGAGGGTGACGTCGAAGCGGTCGTCGTCGCCGGAGAGCGGGGCCCCGGCGAAGAGGAAGAAGGTGCAGGGGCAAGTGGGAAGTCAAGTTGCAGATTGTGCACGTGGCGAACGGTTATTGGTTAGCTGA 681 0.6505 MYEQSPYESDLALLDSIRRHLLGESESIFGAPTSVSGRSSSCSSLYSCLSDNWGELPFKEDDSEDMVLYGVLRDAVSVGWVPSLDAGSPESVSSVPPLPLPPVTEEKKVSPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESGAPAKRKKVQGQVGSQVADCARGERLLVS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1658 226 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 MobiDBLite consensus disorder prediction 180 213 - -
Ssu6g1658 226 PANTHER BNAANNG21280D PROTEIN 22 207 - -
Ssu6g1658 226 Gene3D AP2/ERF domain 115 177 IPR036955 GO:0003700|GO:0006355
Ssu6g1658 226 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 PANTHER DNA-BINDING DOMAIN 22 207 IPR044808 GO:0003700|GO:0009873
Ssu6g1658 226 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Ssu6g1658 226 SUPERFAMILY DNA-binding domain 116 176 IPR016177 GO:0003677
Ssu6g1658 226 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1658 Ssu-Chr6 27705188 27705923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1658 8 225 AP2-EREBP Transcription Factor Family AT4G17500 56.654 9.16e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1658 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1658 K09286 - gmx:100803653 334.339