Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1657 ATGCTTCCTGCTTCCATCGTAGCACCAGAGTTGAAAGTCTCCTCCACGTTCAACCACTCACTTTTCTccccattatatatatatccctTTTCCACTGAACTTAGACACACCACACGAACCAACCCCTATCCTCTCTTATCCCTCCCGAATTTTCAAACACTTTACCTTCTTCTATTTCTCCTCCTTAAGACAAACGATCAAGTTCAACGCAACAAACAAAAAGCGGTTCAGCTTTTAGCGATGGCGAACCCAGCTGAAGTTTCAGCCCTGAATCGCATCAAATTGCATCTTTTAGGCGAACTTTCTCCATTGAACACaccccaacaacaacaacaaccctGGTTCGAATTTGAAGAAACAAACCCTAGCCCCTCTCAATCTTCCACTTCCGACTCTTCAATCTCCTTGAACCACTACTTCACCGAACTCCTCGCACCCGAAACCCAATTTCCCCTCTTCGAATTCGACTCCAAGCCCCAAATAATCGACCTCGAAACCCCGAAGCCCTTTAAACCGAGTTCCAATCAACAACTTTTCGAGAAGAAAGCGCAACTGAACCGGAAACCCTCGCTGCAAATCTCTCTTCCGAAGAAGACCGAGTGGATCCGATTCGGGAACCCGGAGGCGCCGGCGCCGGAGAAGAAGCACTACCGAGGGGTCCGGCAGAGACCGTGGGGCAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCAAGGGTGTGGCTCGGAACCTTCGACACCGCCATCGAAGCAGCCAAGGCATACGACCGCGCCGCCTTCAAACTCCGCGGCTCCAAGGCCATCCTTAACTTCCCCCTCGAGATTGCCGCCGCGGCGGAGAGCGGCGGCGAGAGGAAGCGCCCCCgcgaggaggaggaggtggtggtggaggaAGTGAAGCCGGTGGTGAAGAAGGAGAGAACGACGGAACCGGACGTGAATTGTTTTAGGGAGATGCCGTTAACGCCGTCTATTTGGACTGGGTTCTGGGACAGTGATGCTAAGGATGTATTCAACGTGCCGCCGTTGTCGCCCTTATCTCCTCTTCCGCCTTTTGGATTTTCACCGCTCATGGTTGTGTGA 1089 0.4968 MLPASIVAPELKVSSTFNHSLFSPLYIYPFSTELRHTTRTNPYPLLSLPNFQTLYLLLFLLLKTNDQVQRNKQKAVQLLAMANPAEVSALNRIKLHLLGELSPLNTPQQQQQPWFEFEETNPSPSQSSTSDSSISLNHYFTELLAPETQFPLFEFDSKPQIIDLETPKPFKPSSNQQLFEKKAQLNRKPSLQISLPKKTEWIRFGNPEAPAPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIAAAAESGGERKRPREEEEVVVEEVKPVVKKERTTEPDVNCFREMPLTPSIWTGFWDSDAKDVFNVPPLSPLSPLPPFGFSPLMVV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1657 362 ProSiteProfiles AP2/ERF domain profile. 216 274 IPR001471 GO:0003700|GO:0006355
Ssu6g1657 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 83 347 - -
Ssu6g1657 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 83 347 - -
Ssu6g1657 362 CDD AP2 215 274 IPR001471 GO:0003700|GO:0006355
Ssu6g1657 362 Gene3D AP2/ERF domain 215 276 IPR036955 GO:0003700|GO:0006355
Ssu6g1657 362 SUPERFAMILY DNA-binding domain 216 276 IPR016177 GO:0003677
Ssu6g1657 362 SMART rav1_2 216 280 IPR001471 GO:0003700|GO:0006355
Ssu6g1657 362 Pfam AP2 domain 216 266 IPR001471 GO:0003700|GO:0006355
Ssu6g1657 362 PRINTS Ethylene responsive element binding protein signature 217 228 IPR001471 GO:0003700|GO:0006355
Ssu6g1657 362 PRINTS Ethylene responsive element binding protein signature 256 276 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1657 Ssu-Chr6 27665391 27666479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1657 81 362 AP2-EREBP Transcription Factor Family AT5G47230 50.159 2.68e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1657 AP2 4.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1657 K09286 - gmx:100800453 369.007