Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1653 ATGCATATAGAGGAATTGAAGGGAGGTCAGGTGGTAGAAGGTGGGGAGGAAGGAAGATTGGGGTTTGCGGGTTATGATGCGAAAAGGGTGCTGGTCGGAGCAGGCGCTCGTGCGCTTTTCTATCCAACCCTTTTTTACAATGTTGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGAGCCGTACCATTTCCGATTGATGTTCCCCTCTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGACCATCTGGTAATTCCTACTAGAGATTACTGTTTTGCTCCTTCATTGCATGACATACGGCGTGCTGTGGACTTCATACATGAAAATGCATTGTCTGGACGCACTACATATGTCCATTGCAAAGCTGGACGTGGTCGCAGCACGactattgttatttgttatctGGTGCACCACAAACTGATGACACCTGATGCTGCATATGATTATGTGAAATCTATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAAGAATACTACTACCATCTTATGGTGAGGAGGGCCGTTGGATGTGCTCCTACAGCTAATCTATTAGTGAAGGCTTCTCAGGTGGCAGCAGCTTCACGAGATCTTGTGATGTTTGATGATAGTTCTGTAGTCATGGTAACAGAGTCAGATCTAGAAGGTTATGACCCAAGTAATCAATCAGGAACCATGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTATACCGTGTCCGAGTTGCTGGACAGGCAGCATTGGCAAGAATATCATGCGTTTGGCTGCGCTATGGTACTACCAACCAGAAGATTTCTACGGAGAAACTGAGCAGCAGGGAAAGCAGTTGCTCAATCAGGGCTAATCACTTGGGAGAGATTAGTGTCGATATCCACGTGTACTGA 987 0.4498 MHIEELKGGQVVEGGEEGRLGFAGYDAKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPLLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHDIRRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMTPDAAYDYVKSIRPRVLLASSQWQAVQEYYYHLMVRRAVGCAPTANLLVKASQVAAASRDLVMFDDSSVVMVTESDLEGYDPSNQSGTMASEIWADLSVVYRVRVAGQAALARISCVWLRYGTTNQKISTEKLSSRESSCSIRANHLGEISVDIHVY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1653 328 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 328 - -
Ssu6g1653 328 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Ssu6g1653 328 Gene3D Protein tyrosine phosphatase superfamily 59 210 IPR029021 -
Ssu6g1653 328 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Ssu6g1653 328 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Ssu6g1653 328 Pfam Dual specificity phosphatase, catalytic domain 80 201 IPR000340 GO:0008138|GO:0016311
Ssu6g1653 328 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Ssu6g1653 328 SMART ptp_7 101 205 IPR003595 -
Ssu6g1653 328 PANTHER - 1 328 - -
Ssu6g1653 328 CDD PTPMT1 59 201 IPR044596 GO:0004721
Ssu6g1653 328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1653 Ssu-Chr6 27618635 27622772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1653 28 328 Protein tyrosine phosphatase (PTP) family AT2G35680 61.613 8.45e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1653 - - gmx:100790413 612.838