Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1651 ATGCAGAGGCGAAACCCGATCATTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCCGCCGTAGACTGCGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAAACGGAACGAGAGAGAACCCAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGAGGAATCAGCGACGAAGAAGACGAAGCAAAAGTTGGCACTGGCAAAGCAGCTAGGTCTTCGACCAAGACAAGTGGAGGTCTGGTTCCAGAACCGGAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGTGACAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACGACACTCACTATGTGCCCTTCTTGTGAGCGCGTGGCTGTTCCGTCCTCCGCCGTTGATGCTGCCACGCGTCATCATCCCATGGCCCAGGCCCAGGCCCAGGCCCATCCTCGGCCCATACCCATTAGCCCGTGGGCTTCCGTAGTTCCCATTCCGCACCGGCCGTTTGATGCTTTCCACCACTGA 624 0.5593 MQRRNPIIPARNRRESVTFRRRLRRGSGSFVSEQHRFERERKNGTRENPTAKNTTWTEPVPEESATKKTKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCDNLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAQAQAHPRPIPISPWASVVPIPHRPFDAFHH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1651 207 PANTHER - 62 197 - -
Ssu6g1651 207 Gene3D - 61 98 - -
Ssu6g1651 207 SUPERFAMILY Homeodomain-like 69 108 IPR009057 -
Ssu6g1651 207 SMART HOX_1 64 104 IPR001356 GO:0003677
Ssu6g1651 207 MobiDBLite consensus disorder prediction 27 47 - -
Ssu6g1651 207 Pfam Homeodomain 68 98 IPR001356 GO:0003677
Ssu6g1651 207 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Ssu6g1651 207 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Ssu6g1651 207 MobiDBLite consensus disorder prediction 48 62 - -
Ssu6g1651 207 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Ssu6g1651 207 SMART halz 100 143 IPR003106 GO:0006355|GO:0043565
Ssu6g1651 207 Coils Coil 99 136 - -
Ssu6g1651 207 MobiDBLite consensus disorder prediction 27 68 - -
Ssu6g1651 207 CDD homeodomain 70 101 IPR001356 GO:0003677
Ssu6g1651 207 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 62 197 - -
Ssu6g1651 207 Pfam Homeobox associated leucine zipper 100 134 IPR003106 GO:0006355|GO:0043565
Ssu6g1651 207 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1651 Ssu-Chr6 27594748 27595648 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1651 62 205 Homeobox Transcription Factor Family AT4G16780 66.897 1.04e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu6g1651 HALZ 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1651 K09338 - gmx:100813367 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2720 2 87587309 87588865 Ssu6g1651 6 27594748 27595648 PCT