Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1649 ATGATGGTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCCTCACAATACCCCAAATCCTCAACATCTGAGTCTCATGTCGTCCTCTACTCACTCCTCTTCCCCTTCTGGTTGCAATCCTCAGAAACCCTCTTGGAACGAGGCTTTTGCTTCTTCGGATCGAAACTCTGACACATGCAGAGGCGAAACCCGATCATTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCCGCCGTAGACTGCGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGGAACGAGAGAGAACCCAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGAGGAATCAGCGACGAAGAAGACGGTGAAACCTCACGGAAAAAACTTAGACTCTCCAAAGACCAATCAGCTATTCTCGAAGAAAGCTTCAAAGAGCACAACACCCTCAACCCCAAGCAAAAGTTGGCACTGGCAAAGCAGCTAGGTCTTCGACCAAGACAAGTGGAGGTCTGGTTCCAGAACCGGAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGTGACAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACGACACTCACTATGTGCCCTTCTTGTGAGCGCGTGGCTGTTCCGTCCTCCGCCGTTGATGCTGCCACGCGTCATCATCCCATGGCCCAGGCCCAGGCCCAGGCCCATCCTCGGCCCATACCCATTAGCCCGTGGGCTTCCGTAGTTCCCATTCCGCACCGGCCGTTTGATGCTTTCCACCACTGA 894 0.5302 MMVEKEDLGLSLSLNFPHNTPNPQHLSLMSSSTHSSSPSGCNPQKPSWNEAFASSDRNSDTCRGETRSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSGKRNEREPNGEEHDMDRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCDNLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAQAQAHPRPIPISPWASVVPIPHRPFDAFHH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1649 297 MobiDBLite consensus disorder prediction 84 137 - -
Ssu6g1649 297 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Ssu6g1649 297 MobiDBLite consensus disorder prediction 23 63 - -
Ssu6g1649 297 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 287 - -
Ssu6g1649 297 Coils Coil 189 226 - -
Ssu6g1649 297 CDD homeodomain 134 191 IPR001356 GO:0003677
Ssu6g1649 297 MobiDBLite consensus disorder prediction 89 104 - -
Ssu6g1649 297 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Ssu6g1649 297 MobiDBLite consensus disorder prediction 105 137 - -
Ssu6g1649 297 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Ssu6g1649 297 PANTHER - 4 287 - -
Ssu6g1649 297 MobiDBLite consensus disorder prediction 23 59 - -
Ssu6g1649 297 Gene3D - 138 188 - -
Ssu6g1649 297 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Ssu6g1649 297 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Ssu6g1649 297 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Ssu6g1649 297 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Ssu6g1649 297 SMART HOX_1 132 194 IPR001356 GO:0003677
Ssu6g1649 297 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Ssu6g1649 297 SUPERFAMILY Homeodomain-like 121 191 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1649 Ssu-Chr6 27562833 27564280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1649 1 295 Homeobox Transcription Factor Family AT4G16780 65.320 1.42e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu6g1649 HD-ZIP_N 9.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1649 K09338 - gmx:100813367 526.168