LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1646	ATGACTCGGCGTTGCTCGCATTGCAGCCACAATGGGCACAACTCCAGGACCTGCCCCAACCGCGGGGTGAAGCTATTCGGAGTCCGATTAACTGATGGGTCGATCCGAAAGAGTGCCAGTATGGGTAATTTAACCCACTACGCTGGTTCCGGGTCCGGACCCCTCCATGCCGGGTCGAATAACCCGGGCTCGCCCGGCGAAACTCCCGATCACGCCGCCGCCGCCGACGGTTACGCCTCCGAGGACTTCGTTCCTGGCTCGTCTTCTAGTTCCCGTGAGAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAGGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCCGCTGACACTCCAATGTTACAGCAAGACTTCTTGTCAGCTAATCAGATACAGACTGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTCCCCTCGACGAAGAGTGCGAATCCATGGATTCCACAAACTCAAATGATGGAGAGCCTGCCCCATCAAAGCCTGAAAACACACAATCATCTTATCCAGTGTTATATCCTGCTTATTATTCTCCGGTGTTCCCGTTTCCTCTGCCCTATTGGTCAGGATACAGTCCAGAGCCCACCAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTTGTTGGCATATCAAAACTGAGTTTAGGGGAGTCTATTGGTGACTCTGGCCCCTCCTCTCTGTCTCTAAAACTTCTTGAAGAAGGACCCTCTAGACAGTCGGCTTTTCATGCAACACCGGCATGTGGCAGTTCAAATATGAGTGGCAGTGCCATCCATGCAGTTTAA	1002	0.503	MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADTPMLQQDFLSANQIQTETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSYPVLYPAYYSPVFPFPLPYWSGYSPEPTKKETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSSLSLKLLEEGPSRQSAFHATPACGSSNMSGSAIHAV	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	186	225	-	-
	Ssu6g1646	333	PANTHER	TRANSCRIPTION FACTOR KUA1	1	324	-	-
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	314	333	-	-
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	209	225	-	-
	Ssu6g1646	333	SMART	sant	96	146	IPR001005	-
	Ssu6g1646	333	CDD	SANT	99	144	IPR001005	-
	Ssu6g1646	333	Gene3D	-	98	150	-	-
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	80	99	-	-
	Ssu6g1646	333	ProSiteProfiles	Myb-like domain profile.	92	144	IPR001005	-
	Ssu6g1646	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	92	148	IPR017930	-
	Ssu6g1646	333	ProSiteProfiles	SANT domain profile.	100	148	IPR017884	-
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	1	21	-	-
	Ssu6g1646	333	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	95	147	IPR006447	GO:0003677
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	315	333	-	-
	Ssu6g1646	333	MobiDBLite	consensus disorder prediction	45	73	-	-
	Ssu6g1646	333	PANTHER	BNAC01G21010D PROTEIN	1	324	-	-
	Ssu6g1646	333	SUPERFAMILY	Homeodomain-like	94	149	IPR009057	-
	Ssu6g1646	333	Pfam	Myb-like DNA-binding domain	99	144	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1646	Ssu-Chr6	27469858	27474381	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Ssu6g1646		Myb_DNA-binding	1.2e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1646	-		-	ccaj:109807943	659.833