Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1644 ATGGACATGGAAGAATCTAACCCTTTAGACAGTGAAGTTCAACCAACCACCTCATCATCCTCTTTCACCATTACTACTtccaccacctcctcctcctcctcctcctccataGAAGAAGCCACTAACACTAAGgagaagaagaacaagaagagaGGCAATAAGGATGGGAAGCACCCTACGTATAGAGGCGTGCGCATGCGTCAATGGGGCAAATGGGTATCCGAAATCAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGCACTTTTCCCACGCCGGATATGGCGGCTCGAGCCCATGACGTGGCGGCTCTCACGATCAAAGGCAGCTCGGCTTACCTCAATTTCCCCGAATTAGCCGCCGAGCTGCCACGTCCGGCCAGCACTTCCCCTAAGGACATCCAAGCCGCTGCCGCTAAAGCCGCTGCCTTAGACTTCGGCCACCAAAGCCACGGAGCAGAATTGGAAGCCGAGTCTGAGCTGAGCCAACCCGTTTCCTCCTCAAGCCTCACACAAGCATCATCATCATCCAATTCATCGTTGAACGGTGAGGATGACACATTCTTGGACCTTCCTGATCTCTCTCTCGACTTGAACCATGGAGCTGATGAGTTTCATTATTCATCGGCTTGGCTTGTAGCCGGAGCCGAACATATAGACCCGAGTTTCCGGCTTGAAGAGCCTTTTCTGTGGGAATCATATTAA 705 0.4752 MDMEESNPLDSEVQPTTSSSSFTITTSTTSSSSSSSIEEATNTKEKKNKKRGNKDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELAAELPRPASTSPKDIQAAAAKAAALDFGHQSHGAELEAESELSQPVSSSSLTQASSSSNSSLNGEDDTFLDLPDLSLDLNHGADEFHYSSAWLVAGAEHIDPSFRLEEPFLWESY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1644 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 231 - -
Ssu6g1644 234 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Ssu6g1644 234 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 MobiDBLite consensus disorder prediction 160 184 - -
Ssu6g1644 234 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Ssu6g1644 234 MobiDBLite consensus disorder prediction 9 39 - -
Ssu6g1644 234 MobiDBLite consensus disorder prediction 152 184 - -
Ssu6g1644 234 MobiDBLite consensus disorder prediction 1 64 - -
Ssu6g1644 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 15 231 - -
Ssu6g1644 234 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1644 Ssu-Chr6 27407097 27407801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1644 49 230 AP2-EREBP Transcription Factor Family AT2G44940 51.675 2.68e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1644 AP2 9.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1644 - - gmx:100812293 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2724 2 87676697 87677356 Ssu6g1644 6 27407097 27407801 PCT