Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1640 ATGGCACCCAGAAACGATGGAGCAGCCAAGAGAGCAATGAACAGAGGGGCATGGACCCCAGAGGAAGACCGAAAGCTAGCCCAATGCATTGAAACTCATGGTGCCAAAAGGTGGAAGGCCGTTGCAGTCAAATCAGGTTTAAATAGATGTGGGAAGAGTTGCAGGCTGCGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTCAATCAAAAAGAAGAGAAACCAGAATCTTCAACGACACAAGAAATTATTGCCCAGAATCAGAGTGCTGGGTACAACAGTGCAGTGTTAGAAAATGAGGTAGCAATTAATGAAAGTGGTAACACAGATGTTAACTTCGACGTGAACGAATTCTTCAACTTCTCCTCTGAGGAACCCAATGGGTTTGAGTGGCTGAACAAGTACTTAGAACTGGACCACGCTCCTGAGGCTAGTCGACTCACTTACCACCTATCCCAGCTAGCATAG 615 0.4439 MAPRNDGAAKRAMNRGAWTPEEDRKLAQCIETHGAKRWKAVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEEKPESSTTQEIIAQNQSAGYNSAVLENEVAINESGNTDVNFDVNEFFNFSSEEPNGFEWLNKYLELDHAPEASRLTYHLSQLA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1640 204 SMART sant 67 115 IPR001005 -
Ssu6g1640 204 SMART sant 14 64 IPR001005 -
Ssu6g1640 204 Gene3D - 71 140 - -
Ssu6g1640 204 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu6g1640 204 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu6g1640 204 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 192 - -
Ssu6g1640 204 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 3 192 - -
Ssu6g1640 204 CDD SANT 72 113 IPR001005 -
Ssu6g1640 204 Gene3D - 15 67 - -
Ssu6g1640 204 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu6g1640 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu6g1640 204 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Ssu6g1640 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu6g1640 204 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu6g1640 204 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1640 Ssu-Chr6 27238654 27242488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1640 8 184 MYB Transcription Factor Family AT3G13540 46.277 5.72e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1640 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1640 K09422 - gmx:100799575 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2726 2 87711950 87712966 Ssu6g1640 6 27238654 27242488 PCT