Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1624 ATGGAAAGACACAAATGCAAGCTTTGTTCACGGTCATTCAGCAATGGCAGAGCCCTCGGTGGGCACATGAAGGCCCACCTCGCCACTCTCCCCCTCCCGCCCAAGCCTCAAACGTTATTCACCGCTTCTGCTTCCTTCTCTTACTCCTCTTCCTCCGACTCCGAACAAGAAGAGAAGGCTCTGATTTATGGGTTGAGGGAGAATCCCAAGAAAAGCGTCAAGCTCGCGGATCCTGAGTTCCCTCCTCTTGCACCCGACACTGCCTCCGTGGTCCAAGACAGAGAGAGCGAGACCGAGTCGAAGAACCCCACTCGCCAACGATCCAAGCGGACCCGGAAATCCACCGTGCCGAAGCTCGGCTTCGCGGCCTCCACGCCGCCGCACGCCGAACCCGAACCCGTCAGCTCCGTCTCCGACACCTCCCCCGAAGAGGACGTCGCCATGTGCCTCATGATGCTCTCCCGGGACACGTGGAAGGCAACCAACAATGCGGGCCCAGCGCAGAGATCGAAGAGGCCCTGCAGCGGATCAGAGATCAAGCTCAAGAGAGTCCGCGGGAAGCACCTCTGCGACAATTGCCGGAAAGCCTTTCGATCCTCTCGTGCGCTCGGGAGTCACAGAAGCGTCTGTTGTCCTCGCGAGGAAGgtgaaaataacaacaacaacaacaacaacaataataatactaagGTTTTTGAATGTCCGTTTTGCTATAAGGTGTTTGGGTCTGGTCAAGCGCTTGGTGGACACAAGAGATCTCACCTCATTCCTTCTTCGTCTTCGGTTGTTAACGATTCTCTTAAATCGAAACAAAGCTTCATAGATCTCAACTTGCCGGCTCCGGCGGAGGACGACAACCTTAGTGTTGTTTCTGATGCGTAA 882 0.5351 MERHKCKLCSRSFSNGRALGGHMKAHLATLPLPPKPQTLFTASASFSYSSSSDSEQEEKALIYGLRENPKKSVKLADPEFPPLAPDTASVVQDRESETESKNPTRQRSKRTRKSTVPKLGFAASTPPHAEPEPVSSVSDTSPEEDVAMCLMMLSRDTWKATNNAGPAQRSKRPCSGSEIKLKRVRGKHLCDNCRKAFRSSRALGSHRSVCCPREEGENNNNNNNNNNNTKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSVVNDSLKSKQSFIDLNLPAPAEDDNLSVVSDA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1624 293 SUPERFAMILY beta-beta-alpha zinc fingers 188 254 IPR036236 -
Ssu6g1624 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 254 IPR013087 -
Ssu6g1624 293 Pfam C2H2-type zinc finger 3 28 - -
Ssu6g1624 293 Pfam C2H2-type zinc finger 188 207 - -
Ssu6g1624 293 Pfam C2H2-type zinc finger 231 255 - -
Ssu6g1624 293 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 293 - -
Ssu6g1624 293 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 293 IPR044303 GO:0006355
Ssu6g1624 293 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Ssu6g1624 293 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Ssu6g1624 293 Gene3D Classic Zinc Finger 185 254 - -
Ssu6g1624 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Ssu6g1624 293 MobiDBLite consensus disorder prediction 59 74 - -
Ssu6g1624 293 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Ssu6g1624 293 SMART c2h2final6 4 26 IPR013087 -
Ssu6g1624 293 SMART c2h2final6 232 254 IPR013087 -
Ssu6g1624 293 SMART c2h2final6 188 208 IPR013087 -
Ssu6g1624 293 MobiDBLite consensus disorder prediction 48 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1624 Ssu-Chr6 27015799 27016680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1624 1 290 C2H2 Transcription Factor Family AT3G60580 38.125 1.37e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g1624 zf-C2H2_6 3.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1624 - - gmx:100806512 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2744 2 87924738 87925583 Ssu6g1624 6 27015799 27016680 PCT