Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1622 ATGGGTAAGGTTCACGGATCTCTCGCACGTGCGGGGAAAGTGAGAGGACAAACCCCCAAAGTGGCGAAgcaagacaagaagaagaagccacGCGGACGCGCTCACAAGCGAATGCAATACAACCGCCGATTCGTCACCGCCGGTAACTTTATCTTCCTCTCTTGTTCCTTCACTTTTCAGATATCTAATCCACATGCCCACAATGTTTAA 210 0.4476 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGNFIFLSCSFTFQISNPHAHNV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1622 69 PANTHER 40S RIBOSOMAL PROTEIN S30 1 47 - -
Ssu6g1622 69 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 47 - -
Ssu6g1622 69 MobiDBLite consensus disorder prediction 1 39 - -
Ssu6g1622 69 Pfam Ribosomal protein S30 3 46 IPR006846 GO:0003735|GO:0005840|GO:0006412
Ssu6g1622 69 MobiDBLite consensus disorder prediction 22 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1622 Ssu-Chr6 26979358 26979670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1622 1 47 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 95.745 4.18e-19 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1622 K02983 - csv:101222561 88.5817