Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1619 ATGGCTCCTCTCTTCATCTGGCTGCAAATGCTTTTGGTTTTCAGTTGCATACTGCATGCAACAACCGTGACGTGCACAACCTACCACGACACCACCCCCAAAATAGTCCCTTCCTCGAACTCGTCCAAGTGGGTCGGACCCATCGGACACCGAGTAATCACCGTTGACATTAACGGCGGCGGCCATTTCCGGTCTGTCCAAGCCGCCGTCAACGCTGTCCCGGAGAACAACAGAATGAACGTCCTTATTCAAATAAGCGCCGGATATTACATAGAGAAGGTGGTGGTGCCCGTGACGAAGCCGTACATTACGTTTCAGGGCGCGGGAAGGGATGTGACGGTGATAGAATGGCATGATCGGGCAAGTGACCCTGGCCCCAACGGCCAACAACTGCGTACTTACAGAACAGCATCTGTTACTGTTTTTGCCAACTATTTCTCTGCTAGGAATATCAGTTTCAAGAACACAGCGCCGGCGCCTATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCGGGGGACAAAGCATATTTCTCCGGCTGTGGGTTCTATGGTGCACAAGACACTCTTTGCGACGATGCTGGCCGCCATTATTTCAAAGAATGTTGCGTCGAGGGCTCCATAGATTTCATTTTTGGGAATGGCAGGTCCATGTACAAGGATTGCGAGCTACACTCAATTGCAACGAGGTTCGGGTCAATAGCAGCCCAAGATAGGAAATCTCGATACGAGAAGACGGGCTTCGCATTCATACGGTGCAGGGTGACGGGAACAGGCCCGATTTACGTAGGCCGTGCAATGGGCCAGTACTCTACCATTGTCTATGCCCACACCTACTTCGACAACATTGTAGCACATGGTGGTTGGGATGATTGGAACACtgccaacaacaataacaaGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGAGCAGCGGCTGTACGTGGGGGGCCCTTGGCCCAAGAGCTAGATTTCGAATCTGCCCATCCATTCCTGGTTAAGAGTTTTGTCAATGGGAGACATTGGATTGTACCCCCTGATGCTTAG 1065 0.5136 MAPLFIWLQMLLVFSCILHATTVTCTTYHDTTPKIVPSSNSSKWVGPIGHRVITVDINGGGHFRSVQAAVNAVPENNRMNVLIQISAGYYIEKVVVPVTKPYITFQGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECCVEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRKSRYEKTGFAFIRCRVTGTGPIYVGRAMGQYSTIVYAHTYFDNIVAHGGWDDWNTANNNNKTVFFGVYKCWGPGAAAVRGGPLAQELDFESAHPFLVKSFVNGRHWIVPPDA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1619 354 SUPERFAMILY Pectin lyase-like 50 349 IPR011050 -
Ssu6g1619 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 352 - -
Ssu6g1619 354 Gene3D - 49 352 IPR012334 -
Ssu6g1619 354 PANTHER PECTINESTERASE 68-RELATED 26 352 - -
Ssu6g1619 354 Pfam Pectinesterase 53 345 IPR000070 GO:0030599|GO:0042545
Ssu6g1619 354 ProSitePatterns Pectinesterase signature 2. 207 216 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1619 Ssu-Chr6 26949949 26954077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1619 8 354 Carbohydrate Esterase AT5G47500 70.605 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1619 - - gmx:100796327 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1619 6 26949949 26954077 Ssu6g1619 6 26949949 26954077 ECH
Ssu2g2747 2 88003682 88008374 Ssu6g1619 6 26949949 26954077 PCT