Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1615 ATGATTTCTGTGTTCCCCAAAACCCTAATTGCCACTCGTTTCTTTTCCCGAACTCGAACACATACTCCTAAACTAACCGCCATTCGAACCATGAGCTCGTCCACCCAGCGCGTCTTCCAGCTCAAGCTTGACCCACTGACCGGTAACTCTGAATGGGTCGTCATCGAAGACGACGACGAAAGCTTCGCCCAGAATTTCCATCAGCCCCTTCTCGCCACGACGTCGTATTTGGACATGCTCAACGACTCCGCCAGAAACGCTGCGTTTCGCCAAGCCATTGAAAAAACCATCACCAAACCTTGCCATGTTCTCGATATCGGTGCTGGAACAGGGTTGCTTTCAATGATGGCTGCACGTGCCACGGGTGACCAAGGGAGGGTCACGGCGTGTGAGTCTTACCTTCCCATGGTGAAGCTGATGAAAAAGGTGTTGCGCCTTAATGGCATGGAGGGAAGAGTCACAGTCATCAACAAGCGCTCTGATGAACTCGAAGTTGGTCGCGATATCTCTTCACGTGCAGATGTTCTTGTAAGCGAGATACTTGATTCAGAGCTACTGGGTGAGGGGCTTATACCGACCCTACAACATGCACATGACAATTTGTTGGTAGAAAACGCTCTGACTGTGCCATATCGAGCAACCACGTACGGACAGCTGGTTGAAAGCACATTCTTATGGCAGCTGCATGATTTGCATAACAATGAGGCTACTGTATCTGATGGCATTCATCTTACTCCTCCAGGACTTGATAGTGTGTTGGGTGTCAAATGTCAGCAATATGCCATGCATTGCGATCCTATACAAGAAGAAATAAAACTGCTTTCAGAACccttcaaaatttttgaatttgatttttggaAACGGCCAGAGAGTTTTGGAGAAACTGAGCTGTGCATAAAGGCAACTAATGATGGGAGAGTTCATGCTGTGGTCTCTTGGTGGGTACTTCAACTTGATCATGAAGGGACCATCTATTATTCCACTGCTCCTAGGTGGATAAGCTCACCAACAATTACAAGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGCAGTGGTATTTCCATATTCAAAGGGGAAGAAATTCATTTACATGCCACTCATACTGCAACTAGTATCTCATATAATTTAGATACCCAAGTACCAACAACTGAGATTTTGAACCATAGGTGGACGACTGGAGATTTGCAGCTTGTACTGCCACCAGAAAGGGCTGCAATCTATGGAGACAGAGGATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGttgcAGGGAAGAGATCGCCGGTTATGCTTGGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACAGCTTTCAGAAGCACCACATGTAATGTCATTACTTCCAGGGCTGAAGGAAAGGGGCCTCCAATATTTGCAAGCTGCTGCCCATGCAAATGGTTTGTCACATAATTGCATAGAAGTTCTTGAAAAAAGGGTGAAACAGTTAACCATGCATGATATGCACCAGAAAAAGGTTGATCTGTTAATAGCAGAACCTTTTTATGTAGGAAATGATGGTATGCTTCCATGGCAGAACCTGCGGTTTTGgaGGGATCGTACAACACTTAATGATATCCTCTCTGAAGATGCTCTGATAATTCCTAGTAAAGGAATATTGAGAGCTTGTGCCATCTCTCTTCCTGATCTTTGGAGAAGTCGTTGTTGCTTGAGTAAGATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCTTGCGGACATCTACCTGAATTAGAAGAGGGTCCTTGTCTGCCTTTTTTTGTCTGGCAATGTGGAGAATTTGATGTGCTTAGTGAGACATTTGATGTGATGGagtttgatttttcaaaacaaatatgcCAATGTCAAGGAAAATCCCAGGTTCAATTCACCAAGAGTGGGGTATGTCATGGGTTTGTGCTATGGATTGACTGGGCTATGGATTTGCAAAATTCTGTGGTGATATCAACTGGTCCAGATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCCCAAAGATCGAGAAATGTCCAAGCATGTTCTGCAGTTCTCGAAGCATTTTTCAATCCATTAAAGGGGGAACTCAAAATTATACTTGATTTCTTATGA 2172 0.4369 MISVFPKTLIATRFFSRTRTHTPKLTAIRTMSSSTQRVFQLKLDPLTGNSEWVVIEDDDESFAQNFHQPLLATTSYLDMLNDSARNAAFRQAIEKTITKPCHVLDIGAGTGLLSMMAARATGDQGRVTACESYLPMVKLMKKVLRLNGMEGRVTVINKRSDELEVGRDISSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENALTVPYRATTYGQLVESTFLWQLHDLHNNEATVSDGIHLTPPGLDSVLGVKCQQYAMHCDPIQEEIKLLSEPFKIFEFDFWKRPESFGETELCIKATNDGRVHAVVSWWVLQLDHEGTIYYSTAPRWISSPTITSPVDWCDHWKQCVWFVPGSGISIFKGEEIHLHATHTATSISYNLDTQVPTTEILNHRWTTGDLQLVLPPERAAIYGDRGWRLSMLKAVQSMLQGRDRRLCLVADDSVFLPLLVAQLSEAPHVMSLLPGLKERGLQYLQAAAHANGLSHNCIEVLEKRVKQLTMHDMHQKKVDLLIAEPFYVGNDGMLPWQNLRFWRDRTTLNDILSEDALIIPSKGILRACAISLPDLWRSRCCLSKIEGFDHSVVNATLGACGHLPELEEGPCLPFFVWQCGEFDVLSETFDVMEFDFSKQICQCQGKSQVQFTKSGVCHGFVLWIDWAMDLQNSVVISTGPDRRYWKQGVKLLGTPRTVGPQRSRNVQACSAVLEAFFNPLKGELKIILDFL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1615 723 Gene3D - 556 722 - -
Ssu6g1615 723 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 386 723 IPR025799 GO:0016274|GO:0018216
Ssu6g1615 723 Gene3D - 212 396 - -
Ssu6g1615 723 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 55 384 IPR025799 GO:0016274|GO:0018216
Ssu6g1615 723 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 39 664 - -
Ssu6g1615 723 Gene3D Vaccinia Virus protein VP39 69 211 IPR029063 -
Ssu6g1615 723 PIRSF Arg_N-mtase 36 722 IPR014644 GO:0006479|GO:0008168
Ssu6g1615 723 Pfam Ribosomal protein L11 methyltransferase (PrmA) 91 183 - -
Ssu6g1615 723 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 473 693 IPR029063 -
Ssu6g1615 723 CDD AdoMet_MTases 103 178 - -
Ssu6g1615 723 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 76 387 IPR029063 -
Ssu6g1615 723 Gene3D Vaccinia Virus protein VP39 403 552 IPR029063 -
Ssu6g1615 723 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 39 664 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1615 Ssu-Chr6 26869487 26875335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1615 64 216 C2H2 Transcription Factor Family AT3G12270 30.247 5.46e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1615 K11438 - gmx:100785846 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1615 6 26869487 26875335 Ssu6g1615 6 26869487 26875335 ECH