Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1602 ATGGCAGCTAGACTACTAGCCCTTTCTCTAGTCCTAAATGTCATCCTTCTTGACATGTCTAGTGCTGCCGAATCCATAGTTGCAAAACCACTTATCCCCAACCCAACAACAGACTTCATCAAGTCCTCATGCGAGTCCACTAGTTACCCCGTCATGTGCGTTCAAAGCCTCTCGAGGTATGCCAACACGATTCGCCAAAGCGAGCAAAAACTAGCCATCAAGGCCCTGTCCGTGAGCGTGTCCAAAACCCGATCATGCGCATCGTTTGTGAAGGAAATGGGCCCGGTGAAGGGGATGAAGCCTATAGAGCACAATACGGTGCGAGAATGCATAGAGTTCATGGATGACAGCGTGGATCGTCTCAGCCAATCGGTTAGGGAGCTTAGGCTTTTGAGAATGTGTCTTGACGGGTTTGATGGGCCCCATGTGGACGCGAACTTGAAGGCTGCCATTAGGCCCAAAATTATGGATGTTTCTCATGTCACTAGTAATGCCCTTGCATTGGTTAATCACTTTGCCTCTAAGAATCGTACTGCCGCACAAACTAAAACGCCATAA 558 0.4875 MAARLLALSLVLNVILLDMSSAAESIVAKPLIPNPTTDFIKSSCESTSYPVMCVQSLSRYANTIRQSEQKLAIKALSVSVSKTRSCASFVKEMGPVKGMKPIEHNTVRECIEFMDDSVDRLSQSVRELRLLRMCLDGFDGPHVDANLKAAIRPKIMDVSHVTSNALALVNHFASKNRTAAQTKTP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1602 185 SMART PMEI_2 35 168 IPR006501 GO:0004857
Ssu6g1602 185 PANTHER PECTINESTERASE INHIBITOR 9 19 129 - -
Ssu6g1602 185 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 173 IPR035513 -
Ssu6g1602 185 PANTHER PECTINESTERASE INHIBITOR-LIKE 133 176 - -
Ssu6g1602 185 PANTHER PECTINESTERASE INHIBITOR-LIKE 19 129 - -
Ssu6g1602 185 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 129 IPR006501 GO:0004857
Ssu6g1602 185 CDD PMEI-like_3 42 174 - -
Ssu6g1602 185 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 172 IPR035513 -
Ssu6g1602 185 Pfam Plant invertase/pectin methylesterase inhibitor 38 168 IPR006501 GO:0004857
Ssu6g1602 185 PANTHER PECTINESTERASE INHIBITOR 9 133 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1602 Ssu-Chr6 26539847 26540481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1602 19 176 Carbohydrate Esterase AT3G14310 25.000 2.37e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1602 - - gmx:100789460 213.386