Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1601 ATGGCAGCCAGACTACTACCCCTTTCTCTAGTCCTAAATGTCATCCTTCTTGACATGTCTGGTGCTGCCGAATCCACAATTGCGAAACCACCCATCCCTAACCCAATAATAGACTTCATCAAGTCCTCATGTGAGTCCACTAGCTACCCCGTCACATGCATTCAAAGCCTCTTGAGGTACGCCAACATGATTCACCAAAATGAGCAAAAACTAGCCATCAAGGCCCTGTCCGTGAGCGTGTCCAAAACCCGATCATGCGCATCGTTTGTGAAGGAAATGGGCCCGGTGAAGGGGATGAAGCCCATAGAGCATCATGTGGTGCAAGAATGCATAGAGTTCATGGATGACAGCGTGGATCGTCTCAGCCAATCGGTTAGGGAGCTTGGGCTTTTTGGTAAGGCCGAGGGGAAGGATTTCGTGTGGCACATGAGTAATGTCAAGACTTGGGTTAGTGCTGCTATGACCAATCAGAGAATGTGTCTTAACGGGTTAGATGGGCCCCATGTGGATACAAACTTGAAGGCTACCATTAGGCCCAGAGTTGTGGATGTTTCTCAAGTAACTAGTAATGCCCTTGCGTTGGTTAATCACTTTGCCTCCAAGAACCGTACTACCGGACAAACTAAAACGCCAGAAATGAAACTCGTAATTAAGTGTATATGCAtgcttaaaagtttaatttgttttgtttaa 693 0.456 MAARLLPLSLVLNVILLDMSGAAESTIAKPPIPNPIIDFIKSSCESTSYPVTCIQSLLRYANMIHQNEQKLAIKALSVSVSKTRSCASFVKEMGPVKGMKPIEHHVVQECIEFMDDSVDRLSQSVRELGLFGKAEGKDFVWHMSNVKTWVSAAMTNQRMCLNGLDGPHVDTNLKATIRPRVVDVSQVTSNALALVNHFASKNRTTGQTKTPEMKLVIKCICMLKSLICFV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1601 230 Pfam Plant invertase/pectin methylesterase inhibitor 38 194 IPR006501 GO:0004857
Ssu6g1601 230 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 198 IPR035513 -
Ssu6g1601 230 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 199 IPR035513 -
Ssu6g1601 230 CDD PMEI-like_3 42 200 - -
Ssu6g1601 230 PANTHER PECTINESTERASE INHIBITOR 9 21 202 - -
Ssu6g1601 230 PANTHER PECTINESTERASE INHIBITOR-LIKE 21 202 - -
Ssu6g1601 230 SMART PMEI_2 35 194 IPR006501 GO:0004857
Ssu6g1601 230 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1601 Ssu-Chr6 26531830 26532522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1601 40 195 Carbohydrate Esterase AT3G14310 29.747 1.98e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1601 - - gmx:100789460 249.98