Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1600 ATGGTCACTAGACTACTAGCCCTTTCTTTGGTCCTAAATGTCATCCTTCTTGACATGTTTGGTGTAGCCGAATCCACAGTTACGAAACCACCCATCCCCAACCCAACAACAGACTTCATCAAGTCCTCATGCGAGTCCACTAGCTACCCCGTCGCATGCGTTCAAAGCCTTTCGAGGTACGCCAACGTGATTCACCAAAGCGAGCAAAAACTAGCCATCAAGGCCCTGTCCGTGAGCGTGTCCAAAACTCGATCATGTGCATCGTTTGTGAAGGAAATGGGCCCGGTGAAGGGGATGAAGCCCATAGAGCACAATGCGGTGCGAGAATGCATAGAGTTCATGGATGACAGTGTGGATCGTCTCAGCCAATCGATTAGGGAGCTTGGGCTTTTGGGTAAGGCCGAGGGGAAGGATTTGCGTGGCACATGA 429 0.5105 MVTRLLALSLVLNVILLDMFGVAESTVTKPPIPNPTTDFIKSSCESTSYPVACVQSLSRYANVIHQSEQKLAIKALSVSVSKTRSCASFVKEMGPVKGMKPIEHNAVRECIEFMDDSVDRLSQSIRELGLLGKAEGKDLRGT 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1600 142 PANTHER PECTINESTERASE INHIBITOR-LIKE 21 130 - -
Ssu6g1600 142 PANTHER PECTINESTERASE INHIBITOR 9 21 130 - -
Ssu6g1600 142 Pfam Plant invertase/pectin methylesterase inhibitor 38 129 IPR006501 GO:0004857
Ssu6g1600 142 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 129 IPR035513 -
Ssu6g1600 142 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 140 IPR035513 -
Ssu6g1600 142 CDD PMEI-like_3 42 133 - -
Ssu6g1600 142 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 129 IPR006501 GO:0004857
Ssu6g1600 142 SMART PMEI_2 35 139 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1600 Ssu-Chr6 26516305 26516733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1600 40 131 Carbohydrate Esterase AT3G14310 25.806 2.55e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1600 - - gmx:100789460 156.377