Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1592 ATGGATTTGAAGTCCTCTCATGCTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAACAAGTCAAGGCTTCGTATGCATTCAAGTTTGCTAGGTTATTCCCAACAAGATTCACCACTCTCTCCTGGGAAGTGCTCAAGAAGCAATTCAAGGAAAAGTACCGGGAGTGTCGATGATGTCAGGTCGAATGGTTGGTTGGATGCTATGAAGGCTTCTTCGCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTGCTCAGGTTGCTTCAATTGACTCTGACCTTGAAGACTATTATTCATGGATGCTTGAATATCCTTCAGCTCTAGACTCCTTTGAGAAAATTATTGACCTTGCAAAGAATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTCTCACCAATAGTGGATGATCCAGATTGTGCCTTTATGTCCGAATCTATGCGTACAACTGTGAGAAGTGTGGCAAAATGTTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGATTTTGTCCAAAAATCACCCAAATTGTGTTAAGTCTACTGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTACCTATGATTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGCAAAagttgaaaatcacaaattttgcgTTTCTGTACATTACCGTAATGTAGAAGAAAATAATTGGACAACGATTGGACAACGTGTCCAtgatgttttgaaaaattaccCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTACGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAACTGATAGGAGTGATGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATCGAGGTTATGGGATTTTGGTTTCGTCGGTTAGGAAAGAAAGCAATGCCTTCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAATTGGAAGGGACAAGAAAGAAAGCATGGGAAGAAGTAA 1176 0.4022 MDLKSSHASPVLTDPVPVNKSRLRMHSSLLGYSQQDSPLSPGKCSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSAQVASIDSDLEDYYSWMLEYPSALDSFEKIIDLAKNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVAKCFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSEILSKNHPNCVKSTDHQGKEITLFQPAREFLPMIDEVFRTLVEITKDIEGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDVLKNYPRLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLTDRSDVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKGQERKHGKK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1592 391 CDD HAD_TPP 123 373 - -
Ssu6g1592 391 TIGRFAM T6PP: trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Ssu6g1592 391 SUPERFAMILY HAD-like 123 381 IPR036412 -
Ssu6g1592 391 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 342 IPR006379 -
Ssu6g1592 391 MobiDBLite consensus disorder prediction 31 60 - -
Ssu6g1592 391 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Ssu6g1592 391 Gene3D - 122 212 IPR023214 -
Ssu6g1592 391 Gene3D - 222 391 IPR023214 -
Ssu6g1592 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 387 IPR044651 GO:0004805|GO:0005992
Ssu6g1592 391 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 387 - -
Ssu6g1592 391 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1592 Ssu-Chr6 26286714 26289193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1592 109 378 Trehalose Biosynthesis Gene Families AT1G70290 27.645 1.45e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1592 K01087 - jre:109011403 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1592 6 26286714 26289193 Ssu6g1592 6 26286714 26289193 ECH