Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1588 ATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTATGAAACATATACAACATTTTCTCACCAAAATTTCCTCCATTCCCACTTTTCCACCTCTAGGGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGCGTTGCTTGTGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCACATAACCTTTTGGAGGAGATACCAAACCCCTCTCCCAATTTTCCTTTGAACCAAACAAATTTAAGTGCATCAAATGAGTTCTCTATTCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATTAAGGACGAGATCCAACGCATCAAGTCCGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 651 0.4731 MFTAIFVTPSSLYETYTTFSHQNFLHSHFSTSRVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFPLNQTNLSASNEFSIPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1588 216 Pfam YABBY protein 33 180 IPR006780 GO:0007275
Ssu6g1588 216 SUPERFAMILY HMG-box 124 173 IPR036910 -
Ssu6g1588 216 PANTHER PROTEIN YABBY 6-RELATED 33 214 IPR006780 GO:0007275
Ssu6g1588 216 Gene3D High mobility group box domain 125 188 IPR036910 -
Ssu6g1588 216 PANTHER PROTEIN YABBY 4 33 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1588 Ssu-Chr6 26207373 26210010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1588 33 214 C2C2-YABBY Transcription Factor Family AT4G00180 60.591 1.56e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu6g1588 YABBY 1.2e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1588 K25796 - gmx:100798441 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1588 6 26207373 26210010 Ssu6g1588 6 26207373 26210010 ECH