Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1587 ATGAACACATTTTCACATGTACCTCCGGGCTTTCGGTTTCATCCGAccgatgaagaacttgttggtTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTGGATCTGTATAAAATTGAGCCATGGGATCTCCAAGAATTATGCAAAATAGGAACGGATGAACAAAATGACTGGTATTTCTTCAGTcataaagataagaaatacCCAACTGGAACTCGAACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTGATTGGCATGAGAAAGACTCTAGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGACTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTCCGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGCGAATGACAGCAATGCAGAAAGTGGGAGAGTATGATCAGTCACCCTGTTGGTACGATGATCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGGCGCATTTCTCAGCCTTATACATCATACCACCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACATACCCCACGATGCTTTCCTCCAACTTCCACAACTGGAAAGCCCCAAACTTACTCAATCAGCAGCCAGTTTGAGTTGCAGCTCAGTTGTCCCTTACGGCTATGAaggcagcaacaacaacaatggaaGCACCTTGCAGTTCTCATCACTTACTCAGGAAGAACAACAGATACAATATTGCCATCAACAAAGTCAACATTCGCTCTATGGTAGCAATGATCATGCGGTGGACCAAGTGACAGATTGGCGAGTACTTGACAAATTTGTTGCATCTCAGCTCAGTCACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCAATCTTCCATGTGGCTGAACAGATTTCTGTGGTTGCAAACGGATCCAAAAAGGAGCAAATTTCCCAGGAGTATGCTTCAACGTCTACCTCCAGTTGCCAGATTGACCTGTGgaagtga 1074 0.4153 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPEEGWVVCRVFKKRMTAMQKVGEYDQSPCWYDDQVSFMQDLESPRRISQPYTSYHPCKPELMELQYNIPHDAFLQLPQLESPKLTQSAASLSCSSVVPYGYEGSNNNNGSTLQFSSLTQEEQQIQYCHQQSQHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNQDVSKETSYSNAPIFHVAEQISVVANGSKKEQISQEYASTSTSSCQIDLWK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1587 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Ssu6g1587 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Ssu6g1587 357 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Ssu6g1587 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 346 - -
Ssu6g1587 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 346 - -
Ssu6g1587 357 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1587 Ssu-Chr6 26170701 26173397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1587 1 357 NAC Transcription Factor Family AT1G12260 58.953 1.05e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g1587 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1587 - - gmx:100783529 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1587 6 26170701 26173397 Ssu6g1587 6 26170701 26173397 ECH
Ssu2g2771 2 88452298 88454009 Ssu6g1587 6 26170701 26173397 PCT