Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1584 ATGGCCGAGGAAGCCAAAGCCAAAGGCAACGCCGCGTTCTCCGCCGGCGACTTCGCCGCCGCCGTCCGGCACTTCTCGGACGCCATCGCGGTCGCCCCCTCCAACCACGTCCTCTACTCCAACCGATCCGCCGCCCACGCGTCCCTCCAGAACTACGCCGAAGCCTTAGCCGACGCCCAGAAAACCGTCGACCTCAAGCCCGACTGGCCCAAGGGCCACAGCCGCCTCGGCGCGGCCCACCTCGGCCTCGGCCGTCACCGCGACGCCGTCTCCGCCTACAGAGCCGGCCTCCGAATCGACCCCGACAACGCCGCTCTCAATTCCGGCCTGGCCGACGCCCAAGCCGCGGCTTCCCGGCCGCCGCCGACCAGCCCCTTCGCCACCGCGTTCTCGGGCGGGGACATGTGGGCCCGCCTCGCCGCGGACCCCACCGCACGGGACTACCTTCAGGAGCCCGAGTTCGTGAAGATCATGCAGGACATCCAGAAGGACCCCAACAAGTTCAATTTGCACTTGAGTGATCAGAGGGTCATGCATGCCATTGGGGTTTTGCTCAATGTTAAGATTCAAACCCCTAGCGATAACGACAACGACGCTGGTGTGCccgaggaggaggaggaggaggagcagGCCGAGCCTGAACCTGAAGCCAAACCCGAGCCTGAAGCGGTGGAATTGacggaggaggagaaggaggTGAGGGATAGGAAGGGTCGGGCTCAGAAGGAGAAGGAAGCTGGCAATGCTGCTTACAAGAAGAAGGATTTCGAAATGGCGATACGACATTACACGACGGCTTTGGAGTTGGACGATGAGGATATATCGTACCTTACTAATCGTGCCGCTGTTTGCTTGGAGATGGGAAAGttaGAGGAATGCATAAAAGATTGTGAAAAGGCTGTTGAAAGGGGAAGAGAACTTAGATCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCACTGGTCAAAATGGCAAAATGCTCTAAGGATTATGAACCTGCCATTGAGACTTTCCAGAAAGCACTTACAGAGCACCGCAACCCAGACACCTTGAAGAAACTGAACGAAGCTGAAAAGGCTAAGAAAGAACTAGAGCTTCAAGAATATTTTGATCCAAAATTGGCCgatgaggagagagaaaaagGAAATGAATTATTCAAGCAGCAGAAGTATCCTGAGGCTATGAAGCATTATACAGAAGCTATAAAAAGGAATCCAAAAGATCCTAAGgCTTACAGTAACAGAGCTGCATGTTATACAAAACTGGGGGCAATGCCCGAAGGTTTAAAAGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTCCAAAGGGTTATACTAGGAAAGGTGCAGTGcaatttttcatgaaagaaTATGACAAAGCTTTGGAAACATACAAGGAGGGGTTGAAACATGACCCTAACAATCAGGAGTTGCTTGATGGCATGAGAAGATGTGTAGAACAAATTAATAAGGCTAGCCGTGGAGATTTAACTCCCGAGGAATTAAAGGAGAGACAGgCCAAGGCAATGCAAGACCCAGAGATACAGAGCATTCTCCAAGACCCTGTTATGAGACAAGTATTGATTGATTTCCAGGAAAATCCCGGAGCTGCACAGGAACATACAAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTGGTCAGTGCTGGGATCGTCCAGATGAGATGA 1707 0.495 MAEEAKAKGNAAFSAGDFAAAVRHFSDAIAVAPSNHVLYSNRSAAHASLQNYAEALADAQKTVDLKPDWPKGHSRLGAAHLGLGRHRDAVSAYRAGLRIDPDNAALNSGLADAQAAASRPPPTSPFATAFSGGDMWARLAADPTARDYLQEPEFVKIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVKIQTPSDNDNDAGVPEEEEEEEQAEPEPEAKPEPEAVELTEEEKEVRDRKGRAQKEKEAGNAAYKKKDFEMAIRHYTTALELDDEDISYLTNRAAVCLEMGKLEECIKDCEKAVERGRELRSDYKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELELQEYFDPKLADEEREKGNELFKQQKYPEAMKHYTEAIKRNPKDPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFPKGYTRKGAVQFFMKEYDKALETYKEGLKHDPNNQELLDGMRRCVEQINKASRGDLTPEELKERQAKAMQDPEIQSILQDPVMRQVLIDFQENPGAAQEHTKNPMVMNKIQKLVSAGIVQMR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Ssu6g1584 568 Coils Coil 351 371 - -
Ssu6g1584 568 SMART CBM 517 556 IPR006636 -
Ssu6g1584 568 SMART CBM 142 181 IPR006636 -
Ssu6g1584 568 MobiDBLite consensus disorder prediction 216 248 - -
Ssu6g1584 568 Coils Coil 223 243 - -
Ssu6g1584 568 SUPERFAMILY TPR-like 239 367 IPR011990 GO:0005515
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Ssu6g1584 568 Pfam TPR repeat 386 427 - -
Ssu6g1584 568 Pfam Tetratricopeptide repeat 276 302 IPR019734 GO:0005515
Ssu6g1584 568 MobiDBLite consensus disorder prediction 189 248 - -
Ssu6g1584 568 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Ssu6g1584 568 Gene3D Tetratricopeptide repeat domain 377 492 IPR011990 GO:0005515
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Ssu6g1584 568 MobiDBLite consensus disorder prediction 198 215 - -
Ssu6g1584 568 Gene3D - 497 568 - -
Ssu6g1584 568 SUPERFAMILY TPR-like 378 491 IPR011990 GO:0005515
Ssu6g1584 568 SMART tpr_5 274 307 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 2 35 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 70 103 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 240 273 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 413 446 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 379 412 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 315 352 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 36 69 IPR019734 GO:0005515
Ssu6g1584 568 SMART tpr_5 447 480 IPR019734 GO:0005515
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 447 480 IPR019734 GO:0005515
Ssu6g1584 568 PANTHER TPR REPEAT CONTAINING PROTEIN 1 567 IPR045248 GO:0006457|GO:0030544|GO:0051879
Ssu6g1584 568 Gene3D Tetratricopeptide repeat domain 238 370 IPR011990 GO:0005515
Ssu6g1584 568 Pfam Tetratricopeptide repeat 448 480 IPR001440 GO:0005515
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 240 273 IPR019734 GO:0005515
Ssu6g1584 568 Gene3D - 122 190 - -
Ssu6g1584 568 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Ssu6g1584 568 Pfam Tetratricopeptide repeat 7 68 - -
Ssu6g1584 568 Pfam Tetratricopeptide repeat 76 120 - -
Ssu6g1584 568 Pfam STI1 domain 134 186 IPR041243 -
Ssu6g1584 568 Pfam STI1 domain 509 560 IPR041243 -
Ssu6g1584 568 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 567 - -
Ssu6g1584 568 SUPERFAMILY TPR-like 1 114 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1584 Ssu-Chr6 26078825 26082067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1584 1 81 U-box Gene Family AT3G07370 32.099 2.63e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1584 K09553 - gmx:100780296 956.051