Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1583 ATGAGCAATGGTGTGCTTGCTGGCTTTCCGGTTGTTGATGTACGTGCAGTACTTGTGGATGGTTCTTACCACGATGTAGATTCAAGTGTGCTGGCATTCCAGTTGGCAGCAAGAGGAGCTTTTAGGGAAGGAATGAGAAAAGCTGGACCAAGGATGCTTGAACCTATAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTGGTGACAAACCGGGTGGCCTTAAGGTGGTTGATTCCCTGGTACCTCTTGCTGAGATGTTCCAGTACGTTAGCACACTAAGAGGGATGACAAAGGGCCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCTCAAAAGAGCAAGAAGTTGCAGCTTAA 447 0.4564 MSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLASKEQEVAA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1583 148 Pfam Elongation factor G, domain IV 1 48 IPR005517 GO:0005525
Ssu6g1583 148 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 1 141 - -
Ssu6g1583 148 Gene3D - 1 52 IPR014721 -
Ssu6g1583 148 Pfam Elongation factor G C-terminus 52 138 IPR000640 -
Ssu6g1583 148 PANTHER RIBOSOME-RELEASING FACTOR 2, MITOCHONDRIAL 1 141 - -
Ssu6g1583 148 SUPERFAMILY Ribosomal protein S5 domain 2-like 1 50 IPR020568 -
Ssu6g1583 148 CDD EFG_mtEFG_C 54 132 IPR035649 -
Ssu6g1583 148 SUPERFAMILY EF-G C-terminal domain-like 54 143 IPR035647 -
Ssu6g1583 148 Gene3D - 53 147 - -
Ssu6g1583 148 SMART EFG_C_a 51 139 IPR000640 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1583 48 119 Eukaryotic Initiation Factors Gene Family AT1G56070 38.356 2.32e-09 52.8