Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1580 ATGGCAGCCAGACTAGTAGCCCTTTCTCTGGTCCTAAATCTCATCCTTCTTCACATGTCTGGTGCTGCCGAATCCGCAGTTGCGAAACCGCCCATCCCCAACCCAACAACAGACTTCATCAAGTCCTCATGCGAGTCCACTAGCTACCCCGTCGCGTGCGTTCAAAGCCTCTCGAGGTACGCCAACGCGATTGGCCAAAGAGAGCGACAACTAGCTATCACGGCCTTGTCCGTGAGCGTGTCCAGAACTCGATCATGCGCATTATTTGTGAAGGAAATGGGCCCGGTGAAGGGGGTGAAGCCCATAGAGCACAATGCGGTGCGAGAATGCATAGAGTTCATGGATGATAGCGTGGACCGTCTCAGCCAATCGATTAGGGAGCTTGGGCTTTTGGGTAAGGCCGAGGGGAATGATTTCGCGTGGCACATGAGTAATGTCCAAACTTGGGTTAGTGCCGCTATGACCAATCAAAAAACATGCCTTGACGGGTTTGATGGGCCCCATGTGGATGCAAACTTGAAGGCTGCTATTAGGCCCAGAGTTGTGGACGTTTCTCAAATCACTAGTAATGCCCTTTCATTGGTTAATCGCTTTGCCTCCAAGAACCGTACTGCCACACAAACTAAAACGCCATAA 636 0.5142 MAARLVALSLVLNLILLHMSGAAESAVAKPPIPNPTTDFIKSSCESTSYPVACVQSLSRYANAIGQRERQLAITALSVSVSRTRSCALFVKEMGPVKGVKPIEHNAVRECIEFMDDSVDRLSQSIRELGLLGKAEGNDFAWHMSNVQTWVSAAMTNQKTCLDGFDGPHVDANLKAAIRPRVVDVSQITSNALSLVNRFASKNRTATQTKTP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1580 211 CDD PMEI-like_3 42 200 - -
Ssu6g1580 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 198 IPR035513 -
Ssu6g1580 211 PANTHER PECTINESTERASE INHIBITOR-LIKE 15 202 - -
Ssu6g1580 211 Pfam Plant invertase/pectin methylesterase inhibitor 38 194 IPR006501 GO:0004857
Ssu6g1580 211 PANTHER PECTINESTERASE INHIBITOR 9 15 202 - -
Ssu6g1580 211 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 196 IPR006501 GO:0004857
Ssu6g1580 211 SMART PMEI_2 35 194 IPR006501 GO:0004857
Ssu6g1580 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1580 Ssu-Chr6 26058734 26059369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1580 19 206 Carbohydrate Esterase AT3G14310 26.455 1.86e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1580 - - gmx:100789460 272.322