Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1579 ATGGCAGCCAGACTACTAGCCCTTTCTTTGGTCCTAAATCTCATCCTTCTTCACATGTCTAGTGCTGCCGAATCCGCAGTTGCGAAACAACCCATCCCTAACCCAACAACAAACTTCATCAAGTCCTCATGCAAGTCCACTAGCTACCCCATCACGTGCGTTCAAAGCCTCTTGAGCTACGCCAGTGCAATTCGCCAAAGCGAGCAACAACTAACCATCACGGCCCTGTCCGTGAGTGTGTCCAAAACCCAATCATGTGCATCGTTTGTGAAGAAAATGGGCACTATAAACGGGATGAAGCCGAGAGAGTACAATGCGGTGCGAGATTGCATAGAGAACATGGATGACAGTGTGGACCGTCTCAGCCAATCAGTTAGGGAGCTTGGGCTTTTGGGTAAGGCCAAGGGGAAGGATTTCGCGTGGCACATGAGTAATGTCCAAACTTGGGTTAGTGCCGCTATCACCGATCAAAAGACGTGTCTTGATGGGTTTGATGGGCCCCACGTGGATGCAAACTTGAAGGATGTCATTGGGCCTAGAGTTGCGGACGTTTCTCAAGTCACTAGTAATGCCCTTGCGTTGGTTAATCGCTTTGCCTCCAAGTATCGTACTGTCGCACAAACTGAAACGCCATAA 636 0.4953 MAARLLALSLVLNLILLHMSSAAESAVAKQPIPNPTTNFIKSSCKSTSYPITCVQSLLSYASAIRQSEQQLTITALSVSVSKTQSCASFVKKMGTINGMKPREYNAVRDCIENMDDSVDRLSQSVRELGLLGKAKGKDFAWHMSNVQTWVSAAITDQKTCLDGFDGPHVDANLKDVIGPRVADVSQVTSNALALVNRFASKYRTVAQTETP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1579 211 CDD PMEI-like_3 42 200 - -
Ssu6g1579 211 SMART PMEI_2 35 194 IPR006501 GO:0004857
Ssu6g1579 211 PANTHER PECTINESTERASE INHIBITOR 9 15 202 - -
Ssu6g1579 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 198 IPR035513 -
Ssu6g1579 211 PANTHER PECTINESTERASE INHIBITOR-LIKE 15 202 - -
Ssu6g1579 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 199 IPR035513 -
Ssu6g1579 211 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 196 IPR006501 GO:0004857
Ssu6g1579 211 Pfam Plant invertase/pectin methylesterase inhibitor 38 194 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1579 Ssu-Chr6 26043680 26044315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1579 19 195 Carbohydrate Esterase AT3G14310 28.652 1.19e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1579 - - gmx:100789460 289.656