Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1572 ATGGGTTCTCAACAGAACAATGGCACGAGCTACCCACCTTCGGAGCCCAAGCCCTGCGCAAACAACTGCGGTTTCTTCGGCACTTCCGAGAATCGAAACCTCTGCTCCCAATGTTACAGGGATCTCTGCCTTGAGGAGGAGCTTGCTGCTATGGAGTCGGTGTTCTGTCCCCCCACGCCACCACCTGCCGTTCCCACAGCGAGGCTACCCTCGCCGGTGGAGCCGTCGCGGGGCACCGCTGGAACGTCGAAAGCGGCGAATCGATGCGGGAGTTGCAACAAGAAGGTTGGGTTGACCGGGTTCGTGTGCAAGTGTGGGACTACCTTCTGCGGGACACATCGTTACCCGGAGAAGCACCAGTGCTCCTATGATTTCAAGGCTGCGGGGCGTGAAGCGATTGCGAAGGAAAACCCTGTTGTCAAGGCTGACAAGGTCGAAAGGTTTTAG 447 0.5794 MGSQQNNGTSYPPSEPKPCANNCGFFGTSENRNLCSQCYRDLCLEEELAAMESVFCPPTPPPAVPTARLPSPVEPSRGTAGTSKAANRCGSCNKKVGLTGFVCKCGTTFCGTHRYPEKHQCSYDFKAAGREAIAKENPVVKADKVERF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1572 148 ProSiteProfiles Zinc finger AN1-type profile. 83 129 IPR000058 GO:0008270
Ssu6g1572 148 SMART AN1_Zf_4 89 126 IPR000058 GO:0008270
Ssu6g1572 148 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 148 - -
Ssu6g1572 148 Gene3D - 66 144 IPR035896 -
Ssu6g1572 148 Pfam AN1-like Zinc finger 89 125 IPR000058 GO:0008270
Ssu6g1572 148 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Ssu6g1572 148 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 148 - -
Ssu6g1572 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 51 - -
Ssu6g1572 148 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Ssu6g1572 148 SUPERFAMILY AN1-like Zinc finger 78 143 IPR035896 -
Ssu6g1572 148 MobiDBLite consensus disorder prediction 64 86 - -
Ssu6g1572 148 Gene3D - 1 58 - -
Ssu6g1572 148 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1572 Ssu-Chr6 25885412 25885858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1572 13 148 C2H2 Transcription Factor Family AT3G52800 40.994 8.72e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1572 - - gmx:100787871 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1572 6 25885412 25885858 Ssu6g1572 6 25885412 25885858 ECH