Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1570 ATGGATCCAATCACAGCACACGGTCATTCCCTTCCCCCTCCTTTCCACACAAGAGATCTCCACCTGCACCACCAGCCGCAGCACCAATTCCAAACCTTAAACCAAGCCACCACGGAAGACGAGCACAGCGGAAGCAGCGGCGCCCAGAAAAGGGGCCTCGAAGAAAACAACAACGAAGGTGGAGGTGAGGCCGAGATATCAAGAAGACCTCGAGGAAGACCAGCCGGGTCCAAAAACAAACCGAAGCCACCCATTATCATCACCCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGGTGCGACATCGTGGAAAGCGTGTCCGAGTTCGCGAGGAAGCGCCAGAGAGGGGCAACCGGCTTCTTCCGGGCCGTTGTCACTCTCCACGGAAGGTTCGAGATCTTGTCCCTCTCTGGATCCTTCCTTCCTCCGCCGGCGCCACCGGTTGCTTCCGGTTTGACCATTTACTTGGCCGGTGGCCAGGGACAGGTGGTGGGAGGAAGTGTGGTCGGAACACTGGTTGCTTCGGGGCCCGTGGTGATCATGGCTGCTTCGTTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAGGATGAGGACCCTTCGCTGCCGCTGCAAGGAGGTTCAATTGGGTCCCCCGGTGCAAGTGGGGTTGGTCAGTCACAGCTTTTGGGAGGGGATGCAACTGCTCCACTTTTCCATGGTTTGCCCCCTAATCTTCTCAATTCTGTTCAAATGCCTTCTGAGCCATTCTGGGCATCCACTCGCCCGCCGCCGTTCTAA 798 0.5752 MDPITAHGHSLPPPFHTRDLHLHHQPQHQFQTLNQATTEDEHSGSSGAQKRGLEENNNEGGGEAEISRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVESVSEFARKRQRGATGFFRAVVTLHGRFEILSLSGSFLPPPAPPVASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLPLQGGSIGSPGASGVGQSQLLGGDATAPLFHGLPPNLLNSVQMPSEPFWASTRPPPF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 129 263 - -
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 53 123 - -
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 57 - -
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 129 263 IPR014476 GO:0003680
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 53 123 IPR014476 GO:0003680
Ssu6g1570 265 MobiDBLite consensus disorder prediction 56 72 - -
Ssu6g1570 265 CDD DUF296 96 191 IPR005175 -
Ssu6g1570 265 Gene3D - 95 207 - -
Ssu6g1570 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 206 - -
Ssu6g1570 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 57 IPR014476 GO:0003680
Ssu6g1570 265 MobiDBLite consensus disorder prediction 26 53 - -
Ssu6g1570 265 PIRSF ESCAROLA 14 125 IPR014476 GO:0003680
Ssu6g1570 265 PIRSF ESCAROLA 123 263 IPR014476 GO:0003680
Ssu6g1570 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 193 IPR005175 -
Ssu6g1570 265 MobiDBLite consensus disorder prediction 1 87 - -
Ssu6g1570 265 ProSiteProfiles PPC domain profile profile. 79 214 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1570 Ssu-Chr6 25866244 25867088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1570 42 262 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 55.466 1.50e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1570 - - gmx:100807581 427.557