Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1567 ATGGAGGCCAGTGGCGGTGTTAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCAAGGACCGACAACCCGGCTCCGACCGGCGGATCCGCGACGCAGATTCCGGCGACGGCGGGGAGTGCTCCGCCGCCGCCACATCCGCCGCACACGGCGGCGATGGAGGCGTCGCCGGTGACGATGCCGGCGAAGAAGAAGAGGGGCCGGCCGAGAAAGTATGCACCGGACGGGTCGGTGACCATGGCGCTGTCTCCCAAGCCGATATCTTCCTCGGCTCCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGAAGCGTGGAAAAATAAAGCCAACTAGCTCGGTGAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATACGAGGGACGATTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAGTGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGGCGTGTTGTAGGTGGGGGAGTAGCGGGTCTGTTGGTGGCTGCAAGTCCTGTGCAgGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAGGTGATATCAAGTGTGACACCAACTGCAGTTGTACCCATCTCTACTCTTGATCCAATACCAATTCTATCATCGGCGTCTTCCATACGCGGAGATAATTGGTCTGCTATGCCGGCCGAGGCCAAGAACAAGCCAGCTGACATTAATATGTCGCTTCCTGCAGGGTAA 984 0.5366 MEASGGVSGGVTVVGSDAPSDYHVAPRTDNPAPTGGSATQIPATAGSAPPPPHPPHTAAMEASPVTMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSAEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPTAVVPISTLDPIPILSSASSIRGDNWSAMPAEAKNKPADINMSLPAG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1567 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
Ssu6g1567 327 Gene3D - 144 276 - -
Ssu6g1567 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 325 IPR039605 GO:0003680
Ssu6g1567 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 260 - -
Ssu6g1567 327 MobiDBLite consensus disorder prediction 1 101 - -
Ssu6g1567 327 CDD DUF296 143 234 IPR005175 -
Ssu6g1567 327 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
Ssu6g1567 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1567 Ssu-Chr6 25778134 25783167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1567 1 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 61.582 7.29e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1567 - - gmx:100794202 561.992