Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1555 ATGAGTTTTCTCCATCTCCTCCTTCCTCTGTGTCTTTTGGTTGCACTTCCCAGTCCACAGCTAGTTCATGGAAATGCGGAGGTAAGAGCTCTCATGGACTTGAAATCTTCTCTGGACCCAGAAGACAAGCTCCTTGGCTCGTGGACCAGTGATGGTGATCCATGCAGTGGTTCGTTCTTGGGGGTTTTGTGCAACGAGCACAACAAAGTGGCCAATATATCATTGCCAGGAAGGGGTCTTTCTGGCCGTGTCTCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTACAACCATCTCTCTGGGGACATACCCAGAGAGATTGGAAATCTTAAAGAATTGCTCAATCTCTATCTCAACGTTAATAATCTATCTGGAACCATTCCTCCTGATATCGGGAACATGACTAGTCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTAGAGGGGAACATACCTAAGCAACTGGGTTCGTTGAAGCAGCTTAATGCTGTTTCTTTGCAACACAACAAATTAACTGGTCAAATTCCTCTAAGCTTGGGTAACTTGGAGAAGCTAAGGTGGCTATATTTGAGCTATAACAACTTCAATGGCGGGTTCCCTGCAACTCTAGCCGATATTGCAAACCTGGAAGTTCTAGAAGTTCAAAACAATTCTCTTTCAGGGACTGTTCCTTCTGcATTGAAGAGATTAAGGGAAGGATTCCAAGGTGCAAACAACCCAGATCTCTGTGGAGTTGGGTTTTCTACTTTGAAAGCTTGCAATAGAGATAAAATATATGGCGTTGGTCAGATTAGTGCCCCAGATATATCCATAAACAGCAATCCTCCAATAACTTTCCCGAAGCCTGCAAATACCCACATGCATTGTGTCCAGACCCATTGCTCAAAATCAAGAAGGTTTCTTCACGTTGTCATTGCAGCAAGTGTTCCAGCTGCCATTGTCACATTCATAAGTTCtggaattttcaattttgtcagATACCGCCGCCAAAGGCAGAAGGTTAGGAATACTTCAGATTGTTCTGAAGGCCAACTTAGTCCTTACCAGCCTAAAGAGTTCTACAGAAGTTCATCTCCACTTGTTGATCTTGAGTATTATTACAACGGTTGGGATTCATTGGGTGATGGTCAAAATGCCAGTGGATTATCCCACGAATATTTAAACCGTTTTAGATTTAATATTGATGAGATTGAATCAGCAACACAACACCTTTCTGTGGCCAACTTATTGGGTAAGAGCAAACTCTCAGCAGTCTATAAAGGAGTTCTCAGAGACGGTTCTCTTGTGGCTATTAGAAGCATTAGTGTGACTTGCTGCAAAACCGAGGAGGCTGAATTTGTGAAGGGGTTAAGCCTATTAACCTCACTGAGACATGAAAACATTGTTAAGATGAGAGGTTTCTGTTACTCAAGGAGTAGAGGTGAATGGTTTTTTATCTATGACTTTGCCACCAGGGGTAATCTGTCTCAATATCTTGACAAGGAAGATGGAAGTGACCATGTACTTGAATGGTCCAAGAGGGTTTCTATCATCAGGGGTATTGCAAAAGGTATTGGTTATCTGCATAGCAATGAAGCAAGCAAGCCTACAATAGTACACCAAAATATTTCAGTGGAGAAGGTTATTCTAGACCATCAATTTAACCCCTTGATCACGGATGCTGGCCTCCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATATATTACTACCGGACGCTTTACTGAGAAGAGTGATATATACGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGAAAGACATTGGTAGGGGGTTCAATCCGGGTGGCAGTTGAATCCTTCAGATTTGAAGATTTTGTTGACACAAATCTGAAGGGAGATTATCCTAAATCTGAAGCCGCAATTCTTTCAAAGCTTGCAATTCTGTGCACCCATGAACTGCCAGAGCAAAGGCCAACCATGGTGGAGGTGATTCAAGAGATGAGCATGCTTCCTGCTCATTCTTCATGA 2049 0.4246 MSFLHLLLPLCLLVALPSPQLVHGNAEVRALMDLKSSLDPEDKLLGSWTSDGDPCSGSFLGVLCNEHNKVANISLPGRGLSGRVSPAVAELKCLSGLYLHYNHLSGDIPREIGNLKELLNLYLNVNNLSGTIPPDIGNMTSLQVLQLGYNQLEGNIPKQLGSLKQLNAVSLQHNKLTGQIPLSLGNLEKLRWLYLSYNNFNGGFPATLADIANLEVLEVQNNSLSGTVPSALKRLREGFQGANNPDLCGVGFSTLKACNRDKIYGVGQISAPDISINSNPPITFPKPANTHMHCVQTHCSKSRRFLHVVIAASVPAAIVTFISSGIFNFVRYRRQRQKVRNTSDCSEGQLSPYQPKEFYRSSSPLVDLEYYYNGWDSLGDGQNASGLSHEYLNRFRFNIDEIESATQHLSVANLLGKSKLSAVYKGVLRDGSLVAIRSISVTCCKTEEAEFVKGLSLLTSLRHENIVKMRGFCYSRSRGEWFFIYDFATRGNLSQYLDKEDGSDHVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNISVEKVILDHQFNPLITDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTLVGGSIRVAVESFRFEDFVDTNLKGDYPKSEAAILSKLAILCTHELPEQRPTMVEVIQEMSMLPAHSS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1555 682 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Ssu6g1555 682 PANTHER LEUCINE RICH REPEAT KINASE 2 11 675 - -
Ssu6g1555 682 ProSiteProfiles Protein kinase domain profile. 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1555 682 Gene3D Phosphorylase Kinase; domain 1 380 487 - -
Ssu6g1555 682 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 4-LIKE 11 675 - -
Ssu6g1555 682 Gene3D Transferase(Phosphotransferase) domain 1 489 678 - -
Ssu6g1555 682 SUPERFAMILY Protein kinase-like (PK-like) 385 675 IPR011009 -
Ssu6g1555 682 Gene3D Ribonuclease Inhibitor 24 256 IPR032675 -
Ssu6g1555 682 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Ssu6g1555 682 SUPERFAMILY L domain-like 27 235 - -
Ssu6g1555 682 Pfam Protein tyrosine and serine/threonine kinase 411 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1555 Ssu-Chr6 25521216 25524207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1555 1 522 Miscellaneous Gene Families AT4G22730 54.887 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Ssu6g1555 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1555 - - gmx:100784155 1148.65