Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1546 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACCGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGGCTCCTCACAGAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGGCTTGGCAacagGTGGTCCAAGATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCATATCAAGAAAAAACTCCTTAAGATGGGTATTGATCCCGTTACTCATGAACCTCTCAATAAACAGGCAGCGTCTCAGGATAGATCATCCTCCCCTGCAGGGCATTTGCCACAACCTGGCAATAACCTTGATCAGGTCAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAATTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGTGACGACTCTCTAATAGACAGCCTGTGGCTGGATGAAACTCCTCTGGTGGAAGCATTATGGGACACAACACCTAAAGTAGagaacactaataataacatgGGTTTGTTGCCATCTTGGGAGGATAATTGTGCTTGGTTATTGGACTGTCAGGACTTTGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCAAACTATAGGAATGAAGGAAGAGGGGCATTAG 810 0.4543 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDRSSSPAGHLPQPGNNLDQVKETDGVLNSEENSSSSQAENSGDDSLLLDSICSDDSLIDSLWLDETPLVEALWDTTPKVENTNNNMGLLPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALQTIGMKEEGH 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1546 269 MobiDBLite consensus disorder prediction 130 179 - -
Ssu6g1546 269 CDD SANT 16 61 IPR001005 -
Ssu6g1546 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu6g1546 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu6g1546 269 PANTHER PROTEIN ODORANT1-LIKE 2 254 - -
Ssu6g1546 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu6g1546 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu6g1546 269 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Ssu6g1546 269 Gene3D - 71 142 - -
Ssu6g1546 269 CDD SANT 71 112 IPR001005 -
Ssu6g1546 269 Gene3D - 12 67 - -
Ssu6g1546 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu6g1546 269 SMART sant 13 63 IPR001005 -
Ssu6g1546 269 SMART sant 66 114 IPR001005 -
Ssu6g1546 269 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu6g1546 269 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1546 Ssu-Chr6 25390019 25391612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1546 1 248 MYB Transcription Factor Family AT4G22680 61.278 1.35e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1546 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1546 K09422 - gmx:100786965 480.715