Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1544 ATggattctttctttttcattgctCTCACTTTCGTGTTGAGCTTCCATATTCATTTTGCACAAACAAGTGAACTATCGCCAGCCACAAGCAgttcaaaaacatatattatccATGTGAAGGGGCCACAGGATAAGATACTTGCTCAATCAGAAGATTTAGAGAGCTGGTATCATTCATTTATGCCACCTACTATTATGAGCTCTGAGGAACAGCCAAGAATGATTTATTCATACCGGAATGTGATGAGTGGTTTTGCTGCAAGACTCACTGAAGAAGAGCTGAGAGCTGTGGAAAAGAAGAATGGCTTTATTTCTGCTCATCCTGAAAGGATACTAAGTCGTCAAACCACACATACCCCACAATTTTTGGGGTTGCAGCCAAAAATGGGATTGTGGAAGGAATCAAACTTCGGAAAGGGAGTAATTGTTGGGGTGCTGGATTCTGGAATCACGCCTGATCATCCTTCATTCAGCGATGCAGGaatgccaccaccaccacccaaATGGAAAGGGAGATGCGAACTTAATGTGACAGCTTGTAACAACAGACTAATTGGAGCAAGGTCTTTCAACCTCGCTGCAAAGGCAATGAAAGGAGCAGAGGCACCAATTGATGAGGATGGACATGGGACTCACACAGCAAGCACAGCTGCTGGTGCTTTTGTTGATTATGCAGAAGTGCTGGGAAATGCCAAAGGCACAGCAGCAGGGATTGCCCCTTATGCTCACCTGGCAATTTACAGAGTATGCTTTGGAGAAGATTGCCCTGAGAGTGATATATTGGCTGCATTGGACGCAGCTGTGGAGGAAGGCGTGGATGTAATATCAATATCCCTCGGCCTAAGTGAGCCCCTGCCTTTTTTCAATGATAGCACCGCAATAGGCGCATTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTGCAGCAGGAAACTTCGGCCCTTTCCATGGCTCCTTAGTTAATGGAGCCCCTTGGATCCTCACAGTTGGAGCAAGCAATATTGACAGAAGCATTGTAGCAACAGCGAAGCTGGGAAATGGGCAAGAATTTGATGGGGAATCTGTTTTCCAGCCTCCCGATTTTTCTCCAACACTGCTACCCTTGGCATATGCTGGAAAGAATGGCAAACAAGAAGCTGCATTTTGTGCTAATGGATCCTTGAATGATATTGATTTCAGAGGCAAGGTTGTTTTGTGTGAGAGAGGAGGAGGTATAGGAAGAATTGCCAAAGGAGGGGAAGTAAAAAGAGCGGGTGGTGCAGCCATGATTCTCATGAATGATGAAAGCAGTGGCTTCAGTCTCTTAGCTGATGTACATGTTCTACCTGCAACACATGTAAGCTATGATGCTGGACTTAAGATCAAAGCCTATATAAATTCCAGTGCAACACCTACAGCAACCATTTTATTCCAGGGAACTATAATTGGAAACTCCTTATCACCTGCCGTTTCATCCTTCTCTTCAAGAGGTCCCAACTTGCCAAGTCCTGGTATTTTGAAACCAGACATCATAGGACCAGGAGTGAACATCCTAGCTGCATGGCCATTCCCCCTGAATAACAAAGCCAATTCAAAATCCACTTTCAACATTATGTCTGGCACATCAATGTCATGCCCACATCTTAGTGGCGTAGCTGCTTTGCTCAAAAGCTCTCATCCTCACTGGTCACCAGCTGCCATAAAATCTGCCATAATGACTTCTGCAgacataataaatttcaaacacaAACTCATTGTTGATGAAACACTTCGGCCTGCAGATATCTTTGCCACAGGTTCTGGTCACGTGAATCCATCAAGAGCAAATGACCCCGGCTTAGTTTATGATATCAAACCTGATGATTATATACCTTATCTGTGTGGTTTAGGCTACGGTGATATGGAAGTTGGGATCATTGCACACAGAACAATTAAGTGCTCTGAGACTTCAAGCATTCCCGAAGGAGAGCTCAACTATCCCTCATTTTCTGTTGTGCTTGGTTCCTCGCAAACATTCACAAGGACTGTAACAAATGTAGGCGAGGCCAACTTATCTTATGCTGTCATGGTTATGGCACCAGAAGGGGTTGATGTGAAGGTCCAACCAAATAAACTTTACTTTTCAGATGCGAACCAGAAAGAGACATATTCAGTGACATTCAGCCGTACAGAGTTGGGTAATGAAACTGCGAAATATGCTCAAGGGTTTTTACAATGGATCTCTGCCAAACACACTGTACGGAGCCCTATCTTGGTCAACTTTGTATAA 2250 0.4284 MDSFFFIALTFVLSFHIHFAQTSELSPATSSSKTYIIHVKGPQDKILAQSEDLESWYHSFMPPTIMSSEEQPRMIYSYRNVMSGFAARLTEEELRAVEKKNGFISAHPERILSRQTTHTPQFLGLQPKMGLWKESNFGKGVIVGVLDSGITPDHPSFSDAGMPPPPPKWKGRCELNVTACNNRLIGARSFNLAAKAMKGAEAPIDEDGHGTHTASTAAGAFVDYAEVLGNAKGTAAGIAPYAHLAIYRVCFGEDCPESDILAALDAAVEEGVDVISISLGLSEPLPFFNDSTAIGAFAAMQKGIFVSCAAGNFGPFHGSLVNGAPWILTVGASNIDRSIVATAKLGNGQEFDGESVFQPPDFSPTLLPLAYAGKNGKQEAAFCANGSLNDIDFRGKVVLCERGGGIGRIAKGGEVKRAGGAAMILMNDESSGFSLLADVHVLPATHVSYDAGLKIKAYINSSATPTATILFQGTIIGNSLSPAVSSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNKANSKSTFNIMSGTSMSCPHLSGVAALLKSSHPHWSPAAIKSAIMTSADIINFKHKLIVDETLRPADIFATGSGHVNPSRANDPGLVYDIKPDDYIPYLCGLGYGDMEVGIIAHRTIKCSETSSIPEGELNYPSFSVVLGSSQTFTRTVTNVGEANLSYAVMVMAPEGVDVKVQPNKLYFSDANQKETYSVTFSRTELGNETAKYAQGFLQWISAKHTVRSPILVNFV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1544 749 PRINTS Subtilisin serine protease family (S8) signature 205 218 IPR015500 -
Ssu6g1544 749 PRINTS Subtilisin serine protease family (S8) signature 533 549 IPR015500 -
Ssu6g1544 749 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Ssu6g1544 749 Gene3D Peptidase S8/S53 domain 140 616 IPR036852 GO:0004252|GO:0006508
Ssu6g1544 749 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 114 IPR037045 -
Ssu6g1544 749 ProSiteProfiles Serine proteases, subtilase domain profile. 122 603 - -
Ssu6g1544 749 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 30 746 - -
Ssu6g1544 749 SUPERFAMILY PA domain 368 469 IPR046450 -
Ssu6g1544 749 Pfam Subtilase family 138 569 IPR000209 GO:0006508|GO:0008236
Ssu6g1544 749 Pfam Peptidase inhibitor I9 34 112 IPR010259 -
Ssu6g1544 749 CDD PA_subtilisin_like 342 469 - -
Ssu6g1544 749 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 143 154 IPR023827 -
Ssu6g1544 749 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 746 IPR045051 -
Ssu6g1544 749 SUPERFAMILY Subtilisin-like 115 607 IPR036852 GO:0004252|GO:0006508
Ssu6g1544 749 Gene3D - 620 748 - -
Ssu6g1544 749 Pfam Fibronectin type-III domain 650 746 IPR041469 -
Ssu6g1544 749 Gene3D - 336 476 - -
Ssu6g1544 749 CDD Peptidases_S8_3 115 570 IPR034197 -
Ssu6g1544 749 Pfam PA domain 369 455 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1544 Ssu-Chr6 25316940 25319189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1544 5 748 Subtilisin-like Serine Gene Family AT1G04110 42.839 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1544 - - gmx:100812208 1356.27