Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1542 ATGTTTAAAGCACACCCAACTAAAGAACATTCGCCTTTCATTCTTCCATCAAGCAGAAAGCTTCTGCTGAACATggattctttctttttcattgctCTCACTTTCGCGTTGAGCTTCCACATTCATTTTGCTCAAGGAAGTGAACTACCGCCTGCCACAAGTAgttcaaaaacatatattatccATGTGAAGAGGCCACAGGATAGGACACTAGCTCAATCAGAAGACTTAGAGAGCTGGTATCATTCATTCATGCCACCTACTATTATGAGGTCTGAGGAACAGCCACGAATGATTTATTCATACCGTAACGTGATGAGTGGTTTTGCTGCAAGACTCACTGAAGAAGAGTTGAGAGCTGTGGAAAAGAAGAATGGCTTTATTTCTGCTCATCCTGAAAGGATACTACATCCTCAAACCACACATACCCCACAATTTTTGGGGTTGCAGCAACACACCGGATTATGGAAGGAATCAAACTTCGGAAAGGGCGTAATTATTGGGGTGCTGGATTCTGGAATCACGCCTGATAATCCTTCATTCAGTGATGCAGGaatgccaccaccaccacccaaATGGAAAGGGAGATGCGAACTTAATGTGACAGCTtgcaacaacaaaataattggAGCAAGGTCTTTCAACCTCGCAGCAGGGATTGCCCCTTATGCTCACCTGGCAATTTACAAAGTATGCTTTGGAGGAAACTGCCCTGAGAATGATATATTGGCGGCATTGGATGCAGCTGTGGAGGAAGGCGTGGATGTAATATCAATGTCCCTCGGCCTAAGTGAGACAGCTCCTTTTTTCAAAGATAGCACCGCAATAGGCGCATTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTGCAGCAGGAAACTTTGGCCCTTTCCCTAGCTCCTTAGTTAACGGAGCCCCTTGGATCCTCACAGTTGGTGCAAGCAATATTGACAGAAGCATTCTAGCAACAGCAAAGCTGGGAAATGGGCAAGAATTTGATGGGGAATCTGTTTTCCAGCCTTCTGATTTTTGTCCGACACTACTATCCTTAGCATATGCTGGGAAGAATGGCAAACAAGAAGCTGCATTTTGTGCTCCTGGATCCTTGAATGATGTTAATTTCAGAGGCAAGGTTGTTTTGTGCGAGAGAGGGGGTGTAGGAAGAATTGTCAAAGGAGAGGAAGTAAAAAGAGCAGGGGGTGCAGCCATGATTCTCATGAATGATGAAAGCAGTGGTTTCAGTCTCTTAGCTGATGTACATGTTCTACCTGCAACACATGTAAGCTACGATGCTGGACTTAAGATCAAAGCCTATATAAATTCCAGTGCAACACCTACAGCAACCATTTTATTCAAGGGAACTATAATTGGAAACTCCTTATCACCTGCCGTTTCATCCATATCTTCAAGAGGTCCCAACCGGCAAAGTCCTGGTATTTTGAAACCAGACATCATAGGACCAGGCGTGAACATCCTAGCTGCGTGGCCATTCCCCCGATTAACAACACCAATTTTAAATCCACTTTCAACTTTATGTCTGGCACATCAATGTCATGCCCACACCTCAGTGGCGTAG 1578 0.4246 MFKAHPTKEHSPFILPSSRKLLLNMDSFFFIALTFALSFHIHFAQGSELPPATSSSKTYIIHVKRPQDRTLAQSEDLESWYHSFMPPTIMRSEEQPRMIYSYRNVMSGFAARLTEEELRAVEKKNGFISAHPERILHPQTTHTPQFLGLQQHTGLWKESNFGKGVIIGVLDSGITPDNPSFSDAGMPPPPPKWKGRCELNVTACNNKIIGARSFNLAAGIAPYAHLAIYKVCFGGNCPENDILAALDAAVEEGVDVISMSLGLSETAPFFKDSTAIGAFAAMQKGIFVSCAAGNFGPFPSSLVNGAPWILTVGASNIDRSILATAKLGNGQEFDGESVFQPSDFCPTLLSLAYAGKNGKQEAAFCAPGSLNDVNFRGKVVLCERGGVGRIVKGEEVKRAGGAAMILMNDESSGFSLLADVHVLPATHVSYDAGLKIKAYINSSATPTATILFKGTIIGNSLSPAVSSISSRGPNRQSPGILKPDIIGPGVNILAAWPFPRLTTPILNPLSTLCLAHQCHAHTSVA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1542 525 Gene3D Peptidase S8/S53 domain 217 497 IPR036852 GO:0004252|GO:0006508
Ssu6g1542 525 Pfam Peptidase inhibitor I9 58 136 IPR010259 -
Ssu6g1542 525 Pfam Subtilase family 162 500 IPR000209 GO:0006508|GO:0008236
Ssu6g1542 525 Gene3D Peptidase S8/S53 domain 164 215 IPR036852 GO:0004252|GO:0006508
Ssu6g1542 525 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 217 498 IPR045051 -
Ssu6g1542 525 Pfam PA domain 359 436 IPR003137 -
Ssu6g1542 525 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 54 216 - -
Ssu6g1542 525 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 54 216 IPR045051 -
Ssu6g1542 525 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 44 138 IPR037045 -
Ssu6g1542 525 CDD PA_subtilisin_like 324 450 - -
Ssu6g1542 525 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 167 178 IPR023827 -
Ssu6g1542 525 Gene3D - 318 458 - -
Ssu6g1542 525 SUPERFAMILY Subtilisin-like 139 497 IPR036852 GO:0004252|GO:0006508
Ssu6g1542 525 SUPERFAMILY PA domain 357 443 IPR046450 -
Ssu6g1542 525 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 217 498 - -
Ssu6g1542 525 ProSiteProfiles Serine proteases, subtilase domain profile. 146 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1542 Ssu-Chr6 25309390 25310967 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1542 57 496 Subtilisin-like Serine Gene Family AT3G14067 43.461 1.36e-125 384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1542 6 25309390 25310967 Ssu6g1542 6 25309390 25310967 ECH
Ssu6g1542 6 25309390 25310967 Ssu2g2800 2 88905858 88908176 PCT