Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1538 ATGGCTGCGACGCTTCAACATTGTAGCTTCTTGTTCATTACATTTATATGGATGTTCGTAATCACTGGAAAGCCAGCAGTAGTAGCAGGCACATTTCAGTCTAGTGAATGGACACTTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCTACCATGGGAGGAGCATGTGGGTACGGAAATTTGTTCATAAACGGTTACGGGACAGACACAGCTGCTTTGAGCTCGACATTGTTCAACAATGGGTATGCATGCGGGACTTGTTATCAGATACAGTGTGTCCAATCGAGTGCGTGCAACTCCAATGTGCCTTACACTACAGTGACTGCCACCAATCTTTGCCCTCCTAATTGGGCCGAGGCCTCTGATAACGGAGGCTGGTGCAACCCACCACGCTCACATTTTGACATGTCCAAGCCCGCCTTCATGAAAATTGCCCAGTGGCAAGCTGGAATTATTCCTGTTATGTACCGCAGAGTACCGTGCGTGAGGAGTGGAGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCCAACATGTGGGTAAAAGGAAGCGGAACAGGATGGATTAGCATGAGCCACAATTGGGGGGCTTCTTACCAAGCATTTGCAACACTAGGTGGTCAAGCTCTTTCTTTTAAGGTTACTTCCTACACAACCAAAGAGACTATAATAGCATGGAATGTTGCTCCTGCCAACTGGGGTGTAGGACTAACTTATTCCTCCTCTGTCAACTTCAATTAA 792 0.4697 MAATLQHCSFLFITFIWMFVITGKPAVVAGTFQSSEWTLAHATFYGDETASATMGGACGYGNLFINGYGTDTAALSSTLFNNGYACGTCYQIQCVQSSACNSNVPYTTVTATNLCPPNWAEASDNGGWCNPPRSHFDMSKPAFMKIAQWQAGIIPVMYRRVPCVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWISMSHNWGASYQAFATLGGQALSFKVTSYTTKETIIAWNVAPANWGVGLTYSSSVNFN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1538 263 Gene3D - 23 163 IPR036908 -
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Ssu6g1538 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Ssu6g1538 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Ssu6g1538 263 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Ssu6g1538 263 PANTHER EXPANSIN-A15 2 262 IPR002963 GO:0009664
Ssu6g1538 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Ssu6g1538 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Ssu6g1538 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Ssu6g1538 263 SMART dpbb_1 72 158 IPR007112 -
Ssu6g1538 263 Gene3D - 169 263 IPR036749 -
Ssu6g1538 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Ssu6g1538 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Ssu6g1538 263 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Ssu6g1538 263 PANTHER EXPANSIN 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1538 Ssu-Chr6 25281719 25282925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1538 9 263 Expansin Gene Family AT1G12560 68.235 1.35e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1538 - - gmx:100781459 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1538 6 25281719 25282925 Ssu6g1538 6 25281719 25282925 ECH
Ssu6g1538 6 25281719 25282925 Ssu2g2806 2 88957984 88959209 PCT