Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1535 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAATGAGACAAGTAGGCAAGTAACCTTCTCGAAGAGAAGGAACGGGTTGCTTAAGAAGGCCTTTGAGCTTTCAGTGCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAGGCTTTATGAGTTCTCCAGTTCAAGATGCTCCAGTATACACAGAACAGTCGAACGCTATCAACGGAAAATCAAGGACCTGGATCTCACCGACAAAGGAATCCCTGAAAATACACAGGAAGGAGATGTCAGCATGGCAAAGAAGATCGAGCACCTAGAAGCTTCCAGAAGGAAGCTTTTGGGAGATGATTTGGATACATGCGGAATTGACGAGTTACAACAACTAGAGAACCAGCTCGAACGCAGCTTGGGCAGAATTAGGGCAAGGAAGAATCAATTGTTCAGGGAGCGAATTGAGAAGCTAAAAGAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGCGAGCAGTGTTCTTCGAGTGATCAGGATGTAGAACTTGTCACAGAAAAGGGGGGAGAAGAGGTGGAGACGGAGTTATTCATAGGGAGACCTGTGAGACGAATGCCGTTAAAGTTGAAGCCCTCAACACATAGTGCTCATATGTACATATCGTAA 657 0.4566 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSRCSSIHRTVERYQRKIKDLDLTDKGIPENTQEGDVSMAKKIEHLEASRRKLLGDDLDTCGIDELQQLENQLERSLGRIRARKNQLFRERIEKLKEEEKCLLEVNKRLREQCSSSDQDVELVTEKGGEEVETELFIGRPVRRMPLKLKPSTHSAHMYIS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1535 218 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Ssu6g1535 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 Coils Coil 121 170 - -
Ssu6g1535 218 PANTHER MADS BOX PROTEIN 1 200 - -
Ssu6g1535 218 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Ssu6g1535 218 PANTHER MADS-BOX PROTEIN SOC1 1 200 - -
Ssu6g1535 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 Pfam K-box region 95 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g1535 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu6g1535 218 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Ssu6g1535 218 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g1535 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1535 Ssu-Chr6 25213467 25227192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1535 1 208 MADS-box Gene Family AT4G22950 59.091 8.32e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu6g1535 K-box 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1535 - - gmx:100805260 312.383