Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1534 ATGCAAGAAGCAGGGTTGGGCATGATGAGCGGAGACGTGTCAGCCGCCGGCGACCGCCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCACCCACTTTACGAGCAGCTTCTGGCTGCACACGTGTCGTGCCTCCGCGTCGCCACACCCATCGACCAGTTGCCTCTCATCGACGCTCAGTTATCGCAGTCCCACCATCTCCTTCGCTCCTATGCCTCACACTATTCCCATTCCCTCTCACCTCACGACCGACAAGAACTTGACAACTTCATGGCACAATATTTGATTGTGTTGTGTACGTTCAAAGAACAGCTTCAGCAACATGTCAGGGTGCATGCCGTGGAGGCTGTCATGGCCTGCCGTGATATTGAAAGTACCTTGCACGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGTTCTTTAGATCAGTCTAGCGCTGAGGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAACTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGGAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAATGGCCCTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTCTGAAGTCCAAGCGCAAGAGAGAGTATTCCCACTAA 870 0.4977 MQEAGLGMMSGDVSAAGDRHHRQVKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYASHYSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLHALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1534 289 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Ssu6g1534 289 Gene3D - 207 282 - -
Ssu6g1534 289 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Ssu6g1534 289 CDD homeodomain 211 272 IPR001356 GO:0003677
Ssu6g1534 289 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Ssu6g1534 289 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Ssu6g1534 289 Pfam KNOX2 domain 80 131 IPR005541 GO:0003677|GO:0005634
Ssu6g1534 289 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
Ssu6g1534 289 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 5 285 - -
Ssu6g1534 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 285 - -
Ssu6g1534 289 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Ssu6g1534 289 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Ssu6g1534 289 SMART HOX_1 210 275 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1534 Ssu-Chr6 25178018 25185997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1534 1 284 Homeobox Transcription Factor Family AT1G62990 79.110 1.40e-171 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu6g1534 KNOX2 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1534 - - gmx:100803130 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1534 6 25178018 25185997 Ssu6g1534 6 25178018 25185997 ECH
Ssu6g1534 6 25178018 25185997 Ssu2g2810 2 89039506 89045735 PCT